View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5749_low_33 (Length: 242)
Name: NF5749_low_33
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749_low_33 |
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| [»] chr5 (7 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 39856707 - 39856475
Alignment:
| Q |
10 |
ggaagagaaaaacaaaattattatagctgaagaaaggaatgttgtcaaaaatactgaagctcaacagtcaaaagtggatatagagaccacttatgatgaa |
109 |
Q |
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| T |
39856707 |
ggaagagaaaaacaaaattattatagctgaagaaaggaatgttgtcaaaaatactgaagctcaacagtcaaaagtggatatagagaccacttatgatgaa |
39856608 |
T |
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| Q |
110 |
ggaaccaacaaagccaacactttaaaatttgtcagcaaagacttgaaagaaattgatgctatgatagatgaggatgtcattggtgcgatcgacagagtgt |
209 |
Q |
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| T |
39856607 |
ggtaccaacaaagccaacactttaaaatttgtcagcaaagacttgaaagaaattgatgctatgatagatgaggatgtcattggtgcgatcgacagagtgt |
39856508 |
T |
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| Q |
210 |
tatcagaagggattactctttcctcaaaatctc |
242 |
Q |
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| T |
39856507 |
tatcagaagggattactctttccttaaaatctc |
39856475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 141 - 233
Target Start/End: Complemental strand, 39897150 - 39897058
Alignment:
| Q |
141 |
tcagcaaagacttgaaagaaattgatgctatgatagatgaggatgtcattggtgcgatcgacagagtgttatcagaagggattactctttcct |
233 |
Q |
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| T |
39897150 |
tcagcatagacttggaagaaattgatgctatgatagatgaggatgtcattgctgcaatcgacagagttttatcagaagggattactctttcct |
39897058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 39737484 - 39737619
Alignment:
| Q |
105 |
atgaaggaaccaacaaagccaacactttaaaatttgtcagcaaagacttgaaagaaattgatgctatgatagatgaggatgtcattggtgcgatcgacag |
204 |
Q |
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| T |
39737484 |
atgaaggtaccagcaaatccaacacttcaaaattagtcagcatagactctgaagaatttgatgctatggtagatgaggatgtcattgcggcaattgacag |
39737583 |
T |
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| Q |
205 |
agtgttatcagaagggattactctttcctcaaaatc |
240 |
Q |
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| T |
39737584 |
agttttatcggaagggattactctttccttaaaatc |
39737619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 38980370 - 38980467
Alignment:
| Q |
145 |
caaagacttgaaagaaattgatgctatgatagatgaggatgtcattggtgcgatcgacagagtgttatcagaagggattactctttcctcaaaatctc |
242 |
Q |
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| T |
38980370 |
caaagacttgaaagaagttgatgctatgatagatgaggatgtcattgcttctatcaacagagttttatcagaagggattaccatttccgtaaaatctc |
38980467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 39864020 - 39863909
Alignment:
| Q |
64 |
tgaagctcaacagtcaaaagtggatatagagaccacttatgatgaaggaaccaacaaagccaacactttaaaatttgtcagcaaagacttgaaagaaatt |
163 |
Q |
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| T |
39864020 |
tgaagctcaacagtcaaaagtggacttagagaccactaatgatgaaggtaccagcaaagccaacaattcaaaattcgtcggcatagactttgaaaaaatt |
39863921 |
T |
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| Q |
164 |
gatgctatgata |
175 |
Q |
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| T |
39863920 |
aatgatatgata |
39863909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 221
Target Start/End: Complemental strand, 39863840 - 39863698
Alignment:
| Q |
79 |
aaaagtggatatagagaccacttatgatgaaggaaccaacaaagccaacactttaaaatttgtcagcaaagacttgaaagaaattgatgctatgatagat |
178 |
Q |
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| T |
39863840 |
aaaagtggacatagagaccactcacaatgaaggttccagcaaagccagctcttcacaaaaaatcagcctagacttgaaagatattgatgctatgataggt |
39863741 |
T |
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| Q |
179 |
gaggatgtcattggtgcgatcgacagagtgttatcagaaggga |
221 |
Q |
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| T |
39863740 |
gaggatgttattgctgcaatcgacaaagttttatccgaaggga |
39863698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 39737408 - 39737477
Alignment:
| Q |
14 |
gagaaaaacaaaattattatagctgaagaaaggaatgttgtcaaaaatactgaagctcaacagtcaaaag |
83 |
Q |
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| T |
39737408 |
gagaaaaacgaaaatattatatccgaagaaacaaatgttgacaaaaacattgaagctcaacagtcaaaag |
39737477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 242
Target Start/End: Complemental strand, 32827097 - 32826957
Alignment:
| Q |
102 |
atgatgaaggaaccaacaaagccaacactttaaaatttgtcagcaaagacttgaaagaaattgatgctatgatagatgaggatgtcattggtgcgatcga |
201 |
Q |
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| T |
32827097 |
atgattaaggtaccagcaaaggcaacacttcaaagtttgtcagcaaagactttgaagaaattgatgctatgatagatgaggacgttgttgctgcaattga |
32826998 |
T |
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| Q |
202 |
cagagtgttatcagaagggattactctttcctcaaaatctc |
242 |
Q |
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| T |
32826997 |
cagagttttattagaagggattacttttcccttaaaatctc |
32826957 |
T |
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