View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5749_low_34 (Length: 240)
Name: NF5749_low_34
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 44829846 - 44829631
Alignment:
| Q |
16 |
gctctactatatgtgtgtttggttaggtcttgtgtcctgataaaaatcatttagtaatatgtggttgagaaatgttaggtttactcattct--------- |
106 |
Q |
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| T |
44829846 |
gctctactatatgtgtgtttggttaggtcttgtgtcatgataaaaatcatttagtaatatgtggttgagaaatgttaggtttactcattctaagatagtc |
44829747 |
T |
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| Q |
107 |
-----aataacacactcaaatagaaactagcaaaatcatgataaatnnnnnnnnnnnnnnnnggtcctcgtaaacaatataatatatagttcatgttgat |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
44829746 |
ctataaataacacactcaaatagaaactagcaaaatcatgataaat----aaataaaaaaaaggtcctcgtaaacaatata--atatagttcatgttgat |
44829653 |
T |
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| Q |
202 |
ttgttccatattgacaagatat |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
44829652 |
ttgttccatattgacaagatat |
44829631 |
T |
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