View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5749_low_36 (Length: 236)
Name: NF5749_low_36
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 89 - 220
Target Start/End: Complemental strand, 29386065 - 29385934
Alignment:
| Q |
89 |
aaaaccctcattaggtaagcgtccacttcccatttttgtggaagtagccttgtgggaactttgaattcactatttctccaccccaatgagtctcttgtgc |
188 |
Q |
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| T |
29386065 |
aaaaccctcattaggtaagtgtccacttcccatttgtgtggaagtagccttgtgggaactttgaattcactatttctccaccccaatgagtctcctgtgc |
29385966 |
T |
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| Q |
189 |
agaatccttcatgcttgtgaatatagatgatg |
220 |
Q |
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| T |
29385965 |
agaatccttcatgcttgtgaatatagaggatg |
29385934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 212
Target Start/End: Complemental strand, 29367587 - 29367426
Alignment:
| Q |
50 |
atctacaacttcaacattcttaaaatatgcagcttttctaaaaccctcattaggtaagcgtccacttcccatttttgtggaagtagccttgtgggaactt |
149 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||| ||| ||| ||||||| ||||||| || ||||||| ||||||| ||||| |
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| T |
29367587 |
atctacaactccaatattcttaaaatatgcagcttttctaaaaccctcatcaggcaagtgtccactacccatttgggtagaagtag-cttgtggaaactt |
29367489 |
T |
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| Q |
150 |
tgaattcactatttctccaccccaatgagtctcttgtgcagaatccttcatgcttgtgaatat |
212 |
Q |
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|||||| | ||||||||||||||||||| ||||| |||| |||||||| | ||||||||| |
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| T |
29367488 |
tgaatttattatttctccaccccaatgaacctcttcagcaggatccttcaagtgtgtgaatat |
29367426 |
T |
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