View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5749_low_4 (Length: 714)
Name: NF5749_low_4
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 478 - 703
Target Start/End: Original strand, 35364579 - 35364799
Alignment:
| Q |
478 |
acttacatttatagaaaaaatgatgaattcgtggagtatggtggctccaatagtcgtggtatcaattgaatgttgggagaagttttcgaagcataaaaac |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35364579 |
acttacatttatagaaaaaatgatgaattcgtggagtatggtggctccaatagtcgtggtatcaattggatgttgggagaagttttcgaagcataaaaac |
35364678 |
T |
|
| Q |
578 |
tacggtggcatggggtttaagacctctcagcttttaacttggcaatgttacttgagtaatgttaaagatatctacgaagatcatcaattgattcttgttg |
677 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35364679 |
tacgatggcatggggtttaagacctctcagcttttaacttggcaatgttacttgagtaatgttagagatatctacgaagatcatcaattgattcttgttg |
35364778 |
T |
|
| Q |
678 |
ttctgtggttgtggtgtgttgatgat |
703 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
35364779 |
ttc-----ttgtggtgtgttgatgat |
35364799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 51 - 204
Target Start/End: Original strand, 35364175 - 35364328
Alignment:
| Q |
51 |
tgtgtctatctggattcagttggatggaacaaacaaaccgtatgatattgtagtggacacgttgaacgcgcatcatatactttgcttgnnnnnnnnagtt |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35364175 |
tgtgtctatctggattcagttggatggaacaaacaaaccgtatgatattgtagtggacacgttgaacgcgcatcatatactttgcttg--ttttttagtt |
35364272 |
T |
|
| Q |
151 |
ggatttgcggcagtaaaataaattggtct-gggca-cttttaaggattctaaaaaa |
204 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| ||||||||||||||||||| |
|
|
| T |
35364273 |
ggatttgcggcagtaaaataaattggtatagggcattttttaaggattctaaaaaa |
35364328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 305 - 404
Target Start/End: Original strand, 35364410 - 35364509
Alignment:
| Q |
305 |
cagagacaccgattaacatttctcaaatatatttacgactttaaatagaaaacaaaattacttgtcatttatcttaatcttaattatttgaaacattatg |
404 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35364410 |
cagagacacccgttaacatttctcaaataaatttacgactttaaatagaaaacaaaattacttgtcatttatcttaatcttaattatttgaaacattatg |
35364509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 518 - 606
Target Start/End: Complemental strand, 21976398 - 21976307
Alignment:
| Q |
518 |
gtggctccaatagtcgtggtatcaattgaatgt--tgggagaagttttcgaagcataaaaactacggtggcatggggttt-aagacctctca |
606 |
Q |
| |
|
||||| |||||||||||||||||||||| |||| ||||||||| | || | |||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
21976398 |
gtggcaccaatagtcgtggtatcaattggatgtcatgggagaagctatcaatgcataaaaactatggtggcatggggtttaaagacctctca |
21976307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 519 - 627
Target Start/End: Complemental strand, 24410075 - 24409964
Alignment:
| Q |
519 |
tggctccaatagtcgtggtatcaattgaatgt--tgggagaagttttcgaagcataaaaactacggtggcatggggtttaa-gacctctcagcttttaac |
615 |
Q |
| |
|
|||||||||||||||||| |||||||| |||| |||| |||||| || | |||||||||||| |||| ||||||| |||| |||| || |||||||| |
|
|
| T |
24410075 |
tggctccaatagtcgtggcatcaattggatgtcatgggtgaagttatctatgcataaaaactatggtgacatgggggttaaggaccaatcgacttttaac |
24409976 |
T |
|
| Q |
616 |
ttggcaatgtta |
627 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24409975 |
ttggcaatgtta |
24409964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 549 - 611
Target Start/End: Original strand, 44674234 - 44674297
Alignment:
| Q |
549 |
gttgggagaagttttcgaagcataaaaactacggtggcatggggtttaa-gacctctcagcttt |
611 |
Q |
| |
|
||||||| ||||| || | ||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
44674234 |
gttgggaaaagttatcaatgcataaaaaatacggtggcatggggtttaaggacctctcagcttt |
44674297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University