View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5749_low_5 (Length: 594)
Name: NF5749_low_5
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749_low_5 |
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| [»] scaffold0354 (1 HSPs) |
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Alignment Details
Target: scaffold0354 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: scaffold0354
Description:
Target: scaffold0354; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 13 - 577
Target Start/End: Complemental strand, 13115 - 12553
Alignment:
| Q |
13 |
taggaggaaggaaaggttagtggatgaacaatgaagaatcacacttaaaatcgcctatgttaagagagcacatgttgnnnnnnncatgtttaccaacatt |
112 |
Q |
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| T |
13115 |
taggaggaaggaaaggttagtggatgaacagtgaagaatcgcacttaaaatcgcctatcttaagagagcacatgttgtttttttcatgtttacca-catt |
13017 |
T |
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| Q |
113 |
aatattaaaaagcaaacagcctcaacatcccacttgccaaaatgatttccaaatttagtgctagannnnnnnnnattaagaaaaatttagtgctagatag |
212 |
Q |
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| T |
13016 |
aatattaaaaagcaaacagcctcaacatcccacttgccaaaatgatttccaaatttagtgctagatttttttttattaagaaaaatttagtgctagatag |
12917 |
T |
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| Q |
213 |
aatgttgacattttaaaaactttttgatcaaagtctagggtatattttcccaaaaataaa-ataaaagtctagggtatatatttttgaagtattaaatca |
311 |
Q |
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| T |
12916 |
aatgttgacattttaaaaacttt--gatcaaagtctagggtatattttctcaaaaaaaaataaaaaaatctagggtatatatttttgaagtattaaatca |
12819 |
T |
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| Q |
312 |
tcatagttatgaatcagtgtatattatttactcaagcctaatctttttgaatataaatatagataaataaagaaatttttcattattacaaatnnnnnnn |
411 |
Q |
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|||||||||||||| ||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12818 |
tcatagttatgaattagtgtatattatttacttaagccttatttttttgaatataaatatagataaataaagaaatttttcattattacaaataaaaaaa |
12719 |
T |
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| Q |
412 |
gaacattaaaacttgaaggccaacaatgaatatacatatatagatcacatgctaaaactctacaatttaagattgtcattccaaatattacagaatatag |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
12718 |
gaacattaaaacttgaaggccaacaatgaatatacatatatagatcacatgctaaaactctacaatgtaagattgtcattccaaatattccagaatatag |
12619 |
T |
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| Q |
512 |
agatccaaaattacaaagtcacaaatgtcacaccctttatacaatctatatttgatcttacaaaaa |
577 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12618 |
agatctaaaattacaaagtcacaaatgtcacaccctttatacaatctatatttgatcttacaaaaa |
12553 |
T |
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