View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5749_low_6 (Length: 479)
Name: NF5749_low_6
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Original strand, 33126328 - 33126774
Alignment:
| Q |
19 |
gggtgtctaagcctcagattgtaatacacagttgacccagctgctcctgtaatcatacctgcaataacaaagatagcagccagagtatttgaaagagctt |
118 |
Q |
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| T |
33126328 |
gggtgtctaagcctcagattgtaatacacagttgacccagctgctcctgtaatcatacctgcaataacaaagatagcagccagagcatttgaaagtgctt |
33126427 |
T |
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| Q |
119 |
tcgaaaatgaattgggacacatcgataaaaatttagaaagaatgcatgtattgtgtgtttggaaccgcattcagaagctagttcatatagcttctgaatc |
218 |
Q |
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| T |
33126428 |
tcgaaaatgaattgggacacatcgataaaaatttagaaagaatgcatgtattgtgtgtttggaaccgcattcagaagctagttcatatagcttctgaatc |
33126527 |
T |
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| Q |
219 |
gcgaccagccacatgctactatttgtagcttcaccaatttcaggtccaaaactgtatttgagacgtgagaaagataattgaaacgtaaatccaaacatcg |
318 |
Q |
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| T |
33126528 |
gcagccaaccacatgctactatttgtagctgcaccaatttcaggtccaaaactgtatttgagacgtgagaaagataattgaaacgtaaatccaaacatcg |
33126627 |
T |
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| Q |
319 |
actatatatctaacaagaatgaataaacataagatagaaatatactaacacttagagagggctgtagaagactttggatcaaaaccaataatcaaagtga |
418 |
Q |
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| T |
33126628 |
actatacatctaacaagaatgaataaacataagatagaaatatactaacacttagagagggctgtagaagactttggatcaaaaccaatgatcaaagtga |
33126727 |
T |
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| Q |
419 |
gcatagggataaaaattcctccacctcctacccctcctacacttccc |
465 |
Q |
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| T |
33126728 |
gcatagggataaaaattcctccacctcctacccctcctacacttccc |
33126774 |
T |
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Back To:
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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 378 - 465
Target Start/End: Complemental strand, 7568728 - 7568641
Alignment:
| Q |
378 |
ggctgtagaagactttggatcaaaaccaataatcaaagtgagcatagggataaaaattcctccacctcctacccctcctacacttccc |
465 |
Q |
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| T |
7568728 |
ggctgtagaagacttgggatcaaagccaatgatcaaagcaagcatagggacaaaaattccaccacctcctacacctccaacacttccc |
7568641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 32663744 - 32663699
Alignment:
| Q |
277 |
tgagacgtgagaaagataattgaaacgtaaatccaaacatcgacta |
322 |
Q |
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| T |
32663744 |
tgagacgtgagaaagacaattcaaatgtaaatccaaacattgacta |
32663699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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