View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5749_low_7 (Length: 446)
Name: NF5749_low_7
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 14203320 - 14202911
Alignment:
| Q |
18 |
gttttagattggaccaaggtccaaaatttggatgtattcgtatacccttcaaaacttatacgaagatggaccatatattgaacacacattaaataccaat |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14203320 |
gttttagattggaccaaggcccaaaatttggatgtattcgtatacccttcaaaacttatacaaagatggaccatatattgaacacacattaaataccaat |
14203221 |
T |
|
| Q |
118 |
gtatcaaggccacatgataggatctgaactgtttcgagtgtccttagagataactatctgagtaacagttcaagagacaaaattctaagcctattatata |
217 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
14203220 |
gtatcaaggccacatgataggatctggattgtttcgagtgtccttagagatagctatcttggtaacagttcaagagacaaaactctaagcctactatata |
14203121 |
T |
|
| Q |
218 |
aatactatctcatggtattgctccagctacactcactttttatcttagatacctatatcacgcatgacgattactgacttgtactgtctgagtttgtaca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14203120 |
aatactatctcatggtattgctccagctacactcactttttatcctagatacctatatcacgcatgac-attactgacttgtactgtctgagtttgtaca |
14203022 |
T |
|
| Q |
318 |
tgcatagtatacacactcccatccattggagaataaggttactattgacaacggttcaacacttgaaggccaatcatcaccactatcgagagaagtcaga |
417 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
14203021 |
tgc-----atacacactcccatccattagagaataaggttactattgacgacggttcaacacttgaagaccaaccatcaccactatcgagagaagtcaga |
14202927 |
T |
|
| Q |
418 |
tgtgtcaggttcacct |
433 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
14202926 |
tgtgtcaggttcacct |
14202911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 21892857 - 21892791
Alignment:
| Q |
196 |
aaaattctaagcctattatataaatactatctcatggtattgctccagctacactcactttttatct |
262 |
Q |
| |
|
||||| |||| |||||| |||||||| || |||||||||||| ||||| |||| ||||||||||||| |
|
|
| T |
21892857 |
aaaatcctaaacctattctataaatattaactcatggtattgatccaggtacattcactttttatct |
21892791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University