View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5749_low_9 (Length: 434)
Name: NF5749_low_9
Description: NF5749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5749_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 7 - 414
Target Start/End: Original strand, 49622856 - 49623263
Alignment:
| Q |
7 |
gtagcataggagggtactaaagcacatgattgaacaaagcatatgaagtaacataaagcttagactaaagtgaatttagagaatcttgttaaaagctata |
106 |
Q |
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| T |
49622856 |
gtagcacaggagggtactaaagcacatgattgaacaaagcatatgaagtaacataaagcttagactaaagtgaatttagagaatcttgttaaaagctata |
49622955 |
T |
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| Q |
107 |
taatggagtgtagtagcagacactaatgaagttgtggttacttttgaccaataaatgttgctattaaacgtaatccaacatgtcaatggggaaacccagg |
206 |
Q |
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| T |
49622956 |
taatggagtgtagtagcagacactaatgaagttgtggttacttttgaccaataaatgttgctattaaacgtaatccaacatgtcaatggggaaacccagg |
49623055 |
T |
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| Q |
207 |
gaatatatcataagcttgtaaagttatggaatcctatgttaattaatactaattttttatctgcttgattggaaccaggaagcttaatttgattttgatt |
306 |
Q |
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| T |
49623056 |
gaatatatcataagcttgtaaagttatggaatcctatgttaattaatactaattttttatctgcttgattggaaccaggaagcttaatttgattttgatt |
49623155 |
T |
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| Q |
307 |
aagtaacatatatgattaaccccctccgttgattaataagaaattagtttgaggtagtattgattaaatgacttggattcttgatatcgaatccttatct |
406 |
Q |
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| T |
49623156 |
aagtaacatatatgattaaccccctccgttgattaataagaaattagtttgaggtagtattgattaaatgacttggattcttgatatcgaatccttatct |
49623255 |
T |
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| Q |
407 |
gcaggggc |
414 |
Q |
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| T |
49623256 |
gcaggggc |
49623263 |
T |
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