View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5750-Insertion-1 (Length: 322)
Name: NF5750-Insertion-1
Description: NF5750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5750-Insertion-1 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 8 - 322
Target Start/End: Original strand, 37410567 - 37410881
Alignment:
| Q |
8 |
gctggcataacagaaaacggaagaagaatcatggtagctattgatgaaggagaagtgagcatttatgctctcacatggtgcctcaagaattaggtttttc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37410567 |
gctggcataacagaaaacggaagaagaatcatggtagctattgatgaaggagaagagagcatttatgctctcacatggtgcctcaagaatttggtttttc |
37410666 |
T |
|
| Q |
108 |
aaaattccaaagatcaccttatcctcctctatgttaagcctcctcgtgttgtctattctgcctttgatggcacaggtaattaaacaaaatttcatggtac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37410667 |
aaaattccaaagatcaccttatcctcctctatgttaagcctcctcgtgttgtttattctgcctttgatggcacaggtaattaaacaaaatttcatggtac |
37410766 |
T |
|
| Q |
208 |
gcagcaaagaattttctattaattttgtaaactcatttaattaatttttgtatcatgtatatgttttaggatacctattctcttctgacataacggcaac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37410767 |
gcagcaaagaattttctattaattttgtaaactcatttaattaatttttgtatcatgtatatgttttaggatacctattctcttctgacataacggcaac |
37410866 |
T |
|
| Q |
308 |
cacggagaagtatag |
322 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
37410867 |
catggagaagtatag |
37410881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University