View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5750_low_1 (Length: 246)
Name: NF5750_low_1
Description: NF5750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5750_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 566613 - 566852
Alignment:
| Q |
1 |
taacgtgttcaatgcttcgtaaattgaaggattagagttgaactttaagtgcagggtgaatatcttgcggtaaatcttctaaatttacgggtggaaggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
566613 |
taacgtgttcaatgcttcgtaaattaaaggattagagttgaactttaagggcagggtgaatatcttgcggtaaatcttctaaatttacgggtggaaggaa |
566712 |
T |
|
| Q |
101 |
catgtagttcacgtttgatggaagaatttcattcctatttggagcataacatgacaacaaatcggttagctaacttgggatgctcttgtgacactagtac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
566713 |
catgtagttcacgtttgatggaagaatttcattcctatttggagcataacatgacaacaaataggttagctaacttgggatgctcttgtgacactagtac |
566812 |
T |
|
| Q |
201 |
atatgtcctgatcaaataggagatgttttcttgatgatgt |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
566813 |
atatgtcctgatcaaataggagatgttttcttgatgatgt |
566852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 845870 - 845954
Alignment:
| Q |
41 |
aactttaagtgcagggtgaatatcttgcggtaaatcttctaaatttacgggtggaaggaacatgtagttcacgtttgatggaaga |
125 |
Q |
| |
|
|||||| || |||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| | ||||||||||||| |
|
|
| T |
845870 |
aactttgagcgcagggtgaatatcttttggtaaatcttctaaatttattggtggaagaaacatgtagtttatgtttgatggaaga |
845954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 131
Target Start/End: Original strand, 876320 - 876410
Alignment:
| Q |
41 |
aactttaagtgcagggtgaatatcttgcggtaaatcttctaaatttacgggtggaaggaacatgtagttcacgtttgatggaagaatttca |
131 |
Q |
| |
|
|||||| || |||||||||||||||| ||||| ||||||||||||| |||||||| ||||||||||| | ||||||||||||| ||||| |
|
|
| T |
876320 |
aactttgagcgcagggtgaatatcttttggtaagtcttctaaatttatcggtggaagaaacatgtagtttatgtttgatggaagagtttca |
876410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University