View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5750_low_2 (Length: 238)
Name: NF5750_low_2
Description: NF5750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5750_low_2 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 566546 - 566327
Alignment:
| Q |
3 |
aagaaactagatattttggcctattcatattttccatccacaaccgtgttactatcactttgttaatttgctttcttcaaatatagagagaacaatttct |
102 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
566546 |
aagaaactagatattttagcctattcatattttccatccacaaccgtgttactatcactttgttaatttgctttcttcaaatatagagagaacaatttct |
566447 |
T |
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| Q |
103 |
tccacatacaaagacctattagaaccattagcgactccttattgcatacctatatattctatttagctgatgggcaccacaagttgaaattcttggtcat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
566446 |
tccacatacaaagacctattagaaccattagcgactccttattgcatacctatatattctatttagctgatgggcaccacaagttgaaattcttggtcat |
566347 |
T |
|
| Q |
203 |
agttcaattgatggattttt |
222 |
Q |
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|||||||||||||||||||| |
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| T |
566346 |
agttcaattgatggattttt |
566327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 548817 - 548767
Alignment:
| Q |
172 |
atgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt |
222 |
Q |
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|||||| |||||||||||||||||| |||||||||||| || ||| ||||| |
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| T |
548817 |
atgggctccacaagttgaaattcttagtcatagttcaactggtggtttttt |
548767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 894569 - 894519
Alignment:
| Q |
172 |
atgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt |
222 |
Q |
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| T |
894569 |
atgggcaccacaagttgagattcttggtcatggatcaattggtggtttttt |
894519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 906074 - 906124
Alignment:
| Q |
172 |
atgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt |
222 |
Q |
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|||||||||||||||||| |||||||||||| | ||||||| ||| ||||| |
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| T |
906074 |
atgggcaccacaagttgagattcttggtcatggatcaattggtgggttttt |
906124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 23423787 - 23423837
Alignment:
| Q |
172 |
atgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt |
222 |
Q |
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|||||| |||||||||||||||||| |||||||||||| || ||| ||||| |
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| T |
23423787 |
atgggctccacaagttgaaattcttagtcatagttcaactggtggtttttt |
23423837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 845751 - 845623
Alignment:
| Q |
1 |
ccaagaaactagatattttggcctattcatattttccatccacaaccgtgttactatcactttgttaatttgctttcttcaaatatagagagaacaattt |
100 |
Q |
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|
|||||||||| |||||||| ||||| ||||||||||| ||||||||| |||||||||| ||||| ||||| |||||||||| |||| | |||||||| |
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| T |
845751 |
ccaagaaactcgatattttagcctactcatattttccttccacaaccatgttactatcgctttg----tttgcattcttcaaatctagacaaaacaattt |
845656 |
T |
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| Q |
101 |
cttccacatacaaagacctattagaaccattag |
133 |
Q |
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||||| || | |||||||||||||||||||||| |
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| T |
845655 |
cttccgcaaataaagacctattagaaccattag |
845623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 876201 - 876054
Alignment:
| Q |
1 |
ccaagaaactagatattttggcctattcatattttccatccacaaccgtgttactatcactttgttaatttgctttcttcaaatatagagagaacaattt |
100 |
Q |
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|
|||||||||| |||||||| ||||| ||||||||||| ||||||||| |||||||||| ||||| ||||| |||||||| | |||| | |||||||| |
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| T |
876201 |
ccaagaaactcgatattttagcctactcatattttccttccacaaccatgttactatcgctttg----tttgcattcttcaagtctagacaaaacaattt |
876106 |
T |
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| Q |
101 |
cttccacatacaaagacctattagaaccattagcgactccttattgcatacc |
152 |
Q |
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||||| || | |||||||||||||||||||||| || |||| ||||||||| |
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| T |
876105 |
cttccgcaaataaagacctattagaaccattagagattcctggttgcatacc |
876054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 845092 - 845043
Alignment:
| Q |
173 |
tgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt |
222 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
845092 |
tgggcaccacaaattgaaattcttggtcatagttcaattggtgggttttt |
845043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 870376 - 870327
Alignment:
| Q |
173 |
tgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt |
222 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||| ||||| |
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| T |
870376 |
tgggcaccacaaattgaaattcttggtcatagttcaattggtgggttttt |
870327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 8294521 - 8294471
Alignment:
| Q |
172 |
atgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt |
222 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||| ||| ||||| |
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| T |
8294521 |
atgggcaccacaagttgagattcttggtcatggatcaattggtgggttttt |
8294471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 33257234 - 33257284
Alignment:
| Q |
172 |
atgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt |
222 |
Q |
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|
|||||||||||||||||| |||||||||||| | ||||||| ||| ||||| |
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| T |
33257234 |
atgggcaccacaagttgagattcttggtcatggatcaattggtggtttttt |
33257284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 1352 - 1402
Alignment:
| Q |
172 |
atgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt |
222 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||| ||| ||||| |
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|
| T |
1352 |
atgggcaccacaagttgagattcttggtcatggatcaattggtggtttttt |
1402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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