View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751-Insertion-10 (Length: 200)
Name: NF5751-Insertion-10
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751-Insertion-10 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 6 - 200
Target Start/End: Complemental strand, 4215665 - 4215471
Alignment:
| Q |
6 |
cacaataaccattcaaaattgcaacaacaaagagagccaaaacaaatgaagcagtgatttttgccatagtgtatgaatgagtatttttatttttctttat |
105 |
Q |
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| T |
4215665 |
cacaataaccattcaaaattgcaacaacaaagagagccaaaacaaatgaagcagtgatttttgccatagtgtatgaatgagtatttttatttttctttat |
4215566 |
T |
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| Q |
106 |
tgagtttgtttagcatggaatgaaattggcttcatatgaatccaatttatagacctattgattaccttaaatgagaagtgaatgaattaattgtg |
200 |
Q |
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| T |
4215565 |
tgagtttgtttagcatggaatgaaattggcttcatatgaatccaatttatagatctattgatttccttaaatgagaagtgaatgaattaattgtg |
4215471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 4053899 - 4053845
Alignment:
| Q |
146 |
tccaatttatagacctattgattaccttaaatgagaagtgaatgaattaattgtg |
200 |
Q |
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| T |
4053899 |
tccaatttataggactattgattaccttaaatgagaagtgaatcaattaaatgtg |
4053845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 4218201 - 4218139
Alignment:
| Q |
14 |
ccattcaaaattgcaacaacaaagagagccaaaacaaatgaagcagtgatttttgccatagtg |
76 |
Q |
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| T |
4218201 |
ccattcaaaattgcaacaacaaggagaactaaaacaattgaagcaatggtttttgccatagtg |
4218139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 3925020 - 3925074
Alignment:
| Q |
146 |
tccaatttatagacctattgattaccttaaatgagaagtgaatgaattaattgtg |
200 |
Q |
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| T |
3925020 |
tccaatttataggactaattattaccttaaatgagaagtgaatcaattaaatgtg |
3925074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 4218131 - 4218042
Alignment:
| Q |
111 |
ttgtttagcatggaatgaaattggcttcatatgaatccaatttatagacctattgattaccttaaatgagaagtgaatgaattaattgtg |
200 |
Q |
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| T |
4218131 |
ttgttttgcatggaataaaattgactcaatagtactccaatttatagaattgttgatttctctaaatgataagtgaatgaattaattgtg |
4218042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 5398607 - 5398416
Alignment:
| Q |
14 |
ccattcaaaattgcaacaacaaagagagccaaaacaaatgaagcagtgatttttgccatagt----gtatgaatgagtatttttatttttcttt-----a |
104 |
Q |
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| T |
5398607 |
ccattcaaaatcgccgcaacaaggagaaccaaaacaagtgaagcagtggattttgccatagtgtaagtatgaatgagta-ttttattttcctcttgtcga |
5398509 |
T |
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| Q |
105 |
ttgagtttgtttagc-atggaatgaaattggcttcatatgaatccaatttatagacctat-tgattaccttaaatgagaagtgaatgaattaa |
195 |
Q |
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| T |
5398508 |
tggatattgttttgcaatggaataaaattgtctccaaaccactccgatttatagaactatatgatttccttaaatgagaagtgaatgaattaa |
5398416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 5388922 - 5388875
Alignment:
| Q |
148 |
caatttatagacctattgattaccttaaatgagaagtgaatgaattaa |
195 |
Q |
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| T |
5388922 |
caatttatcgaactaatgatttccttaaatgagaagtgaatgaattaa |
5388875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 11952603 - 11952648
Alignment:
| Q |
149 |
aatttatagacctattgattaccttaaatgagaagtgaatgaatta |
194 |
Q |
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| T |
11952603 |
aatttatagaactagtgatttccttaaatgagaagtgaatgaatta |
11952648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 54726901 - 54726832
Alignment:
| Q |
29 |
acaacaaagagagccaaaacaaatgaagcagtgatttttgccatagtgtatgaatgagtatttttatttt |
98 |
Q |
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| T |
54726901 |
acaacaaagacaactagaacaaatgaagcagtggtttttgccataatataagaatcagtatttttatttt |
54726832 |
T |
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