View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751-Insertion-12 (Length: 165)
Name: NF5751-Insertion-12
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751-Insertion-12 |
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| [»] scaffold0242 (1 HSPs) |
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Alignment Details
Target: scaffold0242 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: scaffold0242
Description:
Target: scaffold0242; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 32 - 164
Target Start/End: Original strand, 6352 - 6484
Alignment:
| Q |
32 |
aagttcttgcagaagagtaatgttacatggacagtcttaacacaatcttcatagaaagcaaatgatagctattgatttttctttctttttcctaaacatc |
131 |
Q |
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| T |
6352 |
aagttcttgcagaagagtaatgttacatggacagtcttaacacaatcttcatagaaaccaaatgatagctattgatttttctttctttttcctaaacatc |
6451 |
T |
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| Q |
132 |
aaaaggttctcccttttgttttctctcattcat |
164 |
Q |
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| T |
6452 |
aaaaggttctcccttttgttttctcccattcat |
6484 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.0000000000009; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 29458099 - 29458152
Alignment:
| Q |
41 |
cagaagagtaatgttacatggacagtcttaacacaatcttcatagaaagcaaat |
94 |
Q |
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| T |
29458099 |
cagaagagtaatgttacttggactgtcttaacacaaccttcatagaaaccaaat |
29458152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 29474933 - 29474994
Alignment:
| Q |
82 |
atagaaagcaaatgatagctattgatttttctttctttttcctaaacatcaaaaggttctcc |
143 |
Q |
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| T |
29474933 |
atagaaaccaaatgctcactgttgatttttctttctttttcctaaacatgaaaaggttctcc |
29474994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 27980178 - 27980267
Alignment:
| Q |
56 |
acatggacagtcttaacacaatcttcatagaaagcaaatgatagctattgatttttctttctttttcctaaacatcaaaaggttctcccttt |
147 |
Q |
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| T |
27980178 |
acatggacagtcttaacacagacttcctaaaagccaaatgctcactattaatttttct--ctttttcctaaagatcaaaaggttctcccttt |
27980267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 29444790 - 29444825
Alignment:
| Q |
37 |
cttgcagaagagtaatgttacatggacagtcttaac |
72 |
Q |
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| T |
29444790 |
cttgcagaagagtaatgttacatggacagtcttaac |
29444825 |
T |
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