View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5751-Insertion-13 (Length: 135)

Name: NF5751-Insertion-13
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5751-Insertion-13
NF5751-Insertion-13
[»] chr4 (7 HSPs)
chr4 (8-113)||(22313556-22313661)
chr4 (10-105)||(27060746-27060841)
chr4 (10-105)||(27081858-27081952)
chr4 (9-78)||(6527510-6527579)
chr4 (37-114)||(41493658-41493734)
chr4 (37-114)||(55667070-55667147)
chr4 (37-81)||(35378332-35378376)
[»] chr1 (5 HSPs)
chr1 (8-114)||(1109901-1110006)
chr1 (39-89)||(27447661-27447711)
chr1 (44-104)||(29018257-29018317)
chr1 (16-80)||(16949226-16949290)
chr1 (47-94)||(46790534-46790581)
[»] chr8 (5 HSPs)
chr8 (15-112)||(14649008-14649104)
chr8 (8-114)||(12892125-12892234)
chr8 (15-83)||(20697701-20697769)
chr8 (22-113)||(18257954-18258045)
chr8 (15-54)||(14633585-14633624)
[»] scaffold0057 (1 HSPs)
scaffold0057 (8-114)||(64899-65005)
[»] chr5 (1 HSPs)
chr5 (16-114)||(18989654-18989751)
[»] chr7 (5 HSPs)
chr7 (8-103)||(31255405-31255499)
chr7 (7-105)||(40863500-40863602)
chr7 (37-89)||(22358011-22358063)
chr7 (28-80)||(26189500-26189551)
chr7 (58-113)||(25032481-25032536)
[»] chr2 (3 HSPs)
chr2 (8-81)||(17295563-17295636)
chr2 (37-81)||(35370646-35370690)
chr2 (48-87)||(16778436-16778475)
[»] chr3 (4 HSPs)
chr3 (17-114)||(25873984-25874080)
chr3 (8-61)||(41248617-41248670)
chr3 (39-102)||(33639706-33639769)
chr3 (58-114)||(38411668-38411724)
[»] chr6 (1 HSPs)
chr6 (15-125)||(24111646-24111758)


Alignment Details
Target: chr4 (Bit Score: 78; Significance: 1e-36; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 22313661 - 22313556
Alignment:
Q  8 aaaattccttataattttggatatctatcaattttgaatatatcttatactttcttaaatatcttgtatatattatgcatttgaaaagttattttttctt 107  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| ||| |||||| ||||||||||||    
T  22313661 aaaatttcttataattttggatatctattaattttgaatatatcttataatttcttaaatatcttatatatattatacatctgaaaatttattttttctt 22313562  T
Q  108 cactaa 113  Q
    ||||||    
T  22313561 cactaa 22313556  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 27060841 - 27060746
Alignment:
Q  10 aattccttataattttggatatctatcaattttgaatatatcttatactttcttaaatatcttgtatatattatgcatttgaaaagttattttttc 105  Q
    |||| ||||||||||||||||| ||| |||||||||||||| ||||| ||| |||||||| ||||||||||| |||||||||||| ||||||||||    
T  27060841 aattacttataattttggatatttattaattttgaatatattttataattttttaaatattttgtatatattgtgcatttgaaaatttattttttc 27060746  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 27081952 - 27081858
Alignment:
Q  10 aattccttataattttggatatctatcaattttgaatatatcttatactttcttaaatatcttgtatatattatgcatttgaaaagttattttttc 105  Q
    |||| ||||||||||||||||| ||| |||||||||||||| ||||| ||| |||||||| ||||||||||| |||||||||||| ||||||||||    
T  27081952 aattacttataattttggatatttattaattttgaatatattttataattt-ttaaatattttgtatatattgtgcatttgaaaatttattttttc 27081858  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 6527579 - 6527510
Alignment:
Q  9 aaattccttataattttggatatctatcaattttgaatatatcttatactttcttaaatatcttgtatat 78  Q
    ||||| ||| ||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||    
T  6527579 aaatttcttgtaattttggatatatattaattttgaatatatcttataatttcttaaatatcttgtatat 6527510  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 41493734 - 41493658
Alignment:
Q  37 aattttgaatatatcttatactttcttaaatatcttgtatatattatgcatttgaaaagttattttttcttcactaaa 114  Q
    |||||||||||||||||||| ||||||||||||||||||||| || ||||||| |||| |||  ||||||||||||||    
T  41493734 aattttgaatatatcttataatttcttaaatatcttgtatatgttgtgcatttaaaaattta-cttttcttcactaaa 41493658  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 55667147 - 55667070
Alignment:
Q  37 aattttgaatatatcttatactttcttaaatatcttgtatatattatgcatttgaaaagttattttttcttcactaaa 114  Q
    |||||| ||||||| ||||| ||| |||||||||||||| ||||||| ||||| |||| ||||||||||||| |||||    
T  55667147 aattttaaatatatattataattttttaaatatcttgtaaatattatacatttaaaaatttattttttcttccctaaa 55667070  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 35378376 - 35378332
Alignment:
Q  37 aattttgaatatatcttatactttcttaaatatcttgtatatatt 81  Q
    |||||||||||||||||||| |||||||||||||||||| |||||    
T  35378376 aattttgaatatatcttataatttcttaaatatcttgtaaatatt 35378332  T

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Target: chr1 (Bit Score: 67; Significance: 4e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 1110006 - 1109901
Alignment:
Q  8 aaaattccttataattttggatatctatcaattttgaatatatcttatactttcttaaatatcttgtatatattatgcatttgaaaagttattttttctt 107  Q
    |||||| ||||||||||||||||||| | |||||| ||||||| ||||| |||||||| |||||||||||||||||||||||||||| ||||||||| ||    
T  1110006 aaaatttcttataattttggatatctgttaattttaaatatatattataatttcttaa-tatcttgtatatattatgcatttgaaaatttattttttatt 1109908  T
Q  108 cactaaa 114  Q
    |||||||    
T  1109907 cactaaa 1109901  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 27447711 - 27447661
Alignment:
Q  39 ttttgaatatatcttatactttcttaaatatcttgtatatattatgcattt 89  Q
    |||||||||||||||||| ||||||||||||||||||||| || |||||||    
T  27447711 ttttgaatatatcttataatttcttaaatatcttgtatatgttgtgcattt 27447661  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 29018317 - 29018257
Alignment:
Q  44 aatatatcttatactttcttaaatatcttgtatatattatgcatttgaaaagttatttttt 104  Q
    ||||||||||| | |||||||||| |||||||||| ||||||||||| ||| ||| |||||    
T  29018317 aatatatcttacagtttcttaaatttcttgtatattttatgcatttgcaaatttaattttt 29018257  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 16949226 - 16949290
Alignment:
Q  16 ttataattttggatatctatcaattttgaatatatcttatactttcttaaatatcttgtatatat 80  Q
    |||||||||||||||  ||| || |||| ||||||| |||| || ||||||| ||||||||||||    
T  16949226 ttataattttggatacatattaactttggatatatcatataattccttaaatttcttgtatatat 16949290  T

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Target: chr1; HSP #5
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 46790534 - 46790581
Alignment:
Q  47 atatcttatactttcttaaatatcttgtatatattatgcatttgaaaa 94  Q
    |||| ||||| |||||||||||||||||||||||| | ||||| ||||    
T  46790534 atatattataatttcttaaatatcttgtatatattctccatttaaaaa 46790581  T

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Target: chr8 (Bit Score: 62; Significance: 3e-27; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 14649008 - 14649104
Alignment:
Q  15 cttataattttggatatctatcaattttgaatatatcttatactttcttaaatatcttgtatatattatgcatttgaaaagttattttttcttcacta 112  Q
    ||||||||||||||||||||| ||| || |||||| |||||| |||||||||||| |||||||||| ||||||||||||| |||||||||||||||||    
T  14649008 cttataattttggatatctattaatgttaaatataccttataatttcttaaatat-ttgtatatatcatgcatttgaaaatttattttttcttcacta 14649104  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 12892125 - 12892234
Alignment:
Q  8 aaaattccttataattttggatatctatca---attttgaatatatcttatactttcttaaatatcttgtatatattatgcatttgaaaagttatttttt 104  Q
    |||||| ||||||||||||||||||||| |   |||||||||||| |||||| ||||||||||||||||||||||| |||||||| |||| ||| || ||    
T  12892125 aaaatttcttataattttggatatctattactaattttgaatataccttataatttcttaaatatcttgtatatatcatgcatttaaaaatttaattatt 12892224  T
Q  105 cttcactaaa 114  Q
    ||||| ||||    
T  12892225 cttcaataaa 12892234  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 20697769 - 20697701
Alignment:
Q  15 cttataattttggatatctatcaattttgaatatatcttatactttcttaaatatcttgtatatattat 83  Q
    |||||||||||| |||||||| ||||||||||||||| |||||||| |||||||||||||||| |||||    
T  20697769 cttataattttgaatatctattaattttgaatatatcctatactttattaaatatcttgtatacattat 20697701  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 18257954 - 18258045
Alignment:
Q  22 ttttggatatctatcaattttgaatatatcttatactttcttaaatatcttgtatatattatgcatttgaaaagttattttttcttcactaa 113  Q
    |||||||||  ||| || |||| ||||||| |||| |||||||||| ||||| ||||||||||||| | |||| | |||||||||| |||||    
T  18257954 ttttggatacatattaactttggatatatcatataatttcttaaatttcttgaatatattatgcatataaaaattaattttttcttgactaa 18258045  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 14633585 - 14633624
Alignment:
Q  15 cttataattttggatatctatcaattttgaatatatctta 54  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  14633585 cttataattttggatatctattaattttgaatatacctta 14633624  T

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Target: scaffold0057 (Bit Score: 59; Significance: 2e-25; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 64899 - 65005
Alignment:
Q  8 aaaattccttataattttggatatctatcaattttgaatatatcttatactttcttaaatatcttgtatatattatgcatttgaaaagttattttttctt 107  Q
    |||||| ||||||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||| |||||| | |||||||  ||| || |||||||||    
T  64899 aaaatttcttataattttggatatttatcaatgttgaatatttcttataatttcttaaatatcttttatatactgtgcattttgaaatttgttttttctt 64998  T
Q  108 cactaaa 114  Q
    |||||||    
T  64999 cactaaa 65005  T

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Target: chr5 (Bit Score: 55; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 18989751 - 18989654
Alignment:
Q  16 ttataattttggatatctatcaattttgaatatatcttatactttcttaaatatcttgtatatattatgcatttgaaaagttattttttcttcactaaa 114  Q
    |||||||||||||||| ||  |||||||||||||||||||| ||||||||||||||||||| |||| |||||||| ||| ||| |||||| ||||||||    
T  18989751 ttataattttggatatatactaattttgaatatatcttataatttcttaaatatcttgtatgtattgtgcatttg-aaatttagtttttcctcactaaa 18989654  T

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Target: chr7 (Bit Score: 52; Significance: 3e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 31255499 - 31255405
Alignment:
Q  8 aaaattccttataattttggatatctatcaattttgaatatatcttatactttcttaaatatcttgtatatattatgcatttgaaaagttattttt 103  Q
    |||||| |||||| | |||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||  |||||||||||| ||||||||    
T  31255499 aaaattacttatagtattggttatctattaattttgaatatatcttataatttctt-aatatcttgtatatatggtgcatttgaaaaattattttt 31255405  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 40863500 - 40863602
Alignment:
Q  7 aaaaattccttataattttggatatctatc----aattttgaatatatcttatactttcttaaatatcttgtatatattatgcatttgaaaagttatttt 102  Q
    ||||||| ||||||||||||||||| |||     |||||| ||||||| ||||| ||| ||||||||||||||| |||  || ||||||||| ||||| |    
T  40863500 aaaaattacttataattttggatatgtatatattaattttaaatatatattataattttttaaatatcttgtatgtatagtgtatttgaaaatttattat 40863599  T
Q  103 ttc 105  Q
    |||    
T  40863600 ttc 40863602  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 22358011 - 22358063
Alignment:
Q  37 aattttgaatatatcttatactttcttaaatatcttgtatatattatgcattt 89  Q
    |||||||||||||||||||| |||||||||||||||  | ||||||| |||||    
T  22358011 aattttgaatatatcttataatttcttaaatatctttcaaatattattcattt 22358063  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 26189500 - 26189551
Alignment:
Q  28 atatctatcaattttgaatatatcttatactttcttaaatatcttgtatatat 80  Q
    |||||||| ||||||||||||||||||||  || ||||||||||| |||||||    
T  26189500 atatctattaattttgaatatatcttatagctt-ttaaatatcttctatatat 26189551  T

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Target: chr7; HSP #5
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 25032536 - 25032481
Alignment:
Q  58 tttcttaaatatcttgtatatattatgcatttgaaaagttattttttcttcactaa 113  Q
    |||||||||| ||||| ||||||||||||| |||| | || ||||||||| |||||    
T  25032536 tttcttaaatttcttgaatatattatgcatatgaacatttgttttttctttactaa 25032481  T

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Target: chr2 (Bit Score: 50; Significance: 5e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 17295636 - 17295563
Alignment:
Q  8 aaaattccttataattttggatatctatcaattttgaatatatcttatactttcttaaatatcttgtatatatt 81  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||  ||||||||| ||||    
T  17295636 aaaatttcttataattttggatatgtatcaattttgaatatatcttataatttcttaacaatcttgtatttatt 17295563  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 35370690 - 35370646
Alignment:
Q  37 aattttgaatatatcttatactttcttaaatatcttgtatatatt 81  Q
    |||||||||||||||| ||| |||||||||||||||||| |||||    
T  35370690 aattttgaatatatctaataatttcttaaatatcttgtaaatatt 35370646  T

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Target: chr2; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 16778436 - 16778475
Alignment:
Q  48 tatcttatactttcttaaatatcttgtatatattatgcat 87  Q
    ||||||||| |||||||||||||||||| ||||| |||||    
T  16778436 tatcttataatttcttaaatatcttgtaaatattgtgcat 16778475  T

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Target: chr3 (Bit Score: 46; Significance: 1e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 25873984 - 25874080
Alignment:
Q  17 tataattttggatatctatcaattttgaatatatcttatactttcttaaatatcttgtatatattatgcatttgaaaagttattttttcttcactaaa 114  Q
    |||||||| |||||||| | |||||||||||||| || || ||||||||||| |||||||||||| |||||||| ||| ||||||| |||||| ||||    
T  25873984 tataatttaggatatctgttaattttgaatatatattgtaatttcttaaataacttgtatatattttgcatttg-aaatttattttgtcttcattaaa 25874080  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 41248617 - 41248670
Alignment:
Q  8 aaaattccttataattttggatatctatcaattttgaatatatcttatactttc 61  Q
    |||||| ||||| ||||||||||||||| |||||||||||||||||||| ||||    
T  41248617 aaaatttcttatgattttggatatctattaattttgaatatatcttataatttc 41248670  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 33639706 - 33639769
Alignment:
Q  39 ttttgaatatatcttatactttcttaaatatcttgtatatattatgcatttgaaaagttatttt 102  Q
    |||||||||||||||||| | ||||||||| ||| ||||| || |||||||||||| |||||||    
T  33639706 ttttgaatatatcttataatctcttaaataccttatatatgttgtgcatttgaaaatttatttt 33639769  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 38411724 - 38411668
Alignment:
Q  58 tttcttaaatatcttgtatatattatgcatttgaaaagttattttttcttcactaaa 114  Q
    |||||||||| ||||||| ||  | |||||||||||| |||||||||||| ||||||    
T  38411724 tttcttaaatttcttgtacatgctgtgcatttgaaaatttattttttctttactaaa 38411668  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 24111758 - 24111646
Alignment:
Q  15 cttataattttggatatctatcaattttgaata---tatcttatactttcttaaatatcttgtatatattatgcatttgaaaagtta-ttttttcttcac 110  Q
    ||||||||||| ||||||||| |||||| ||||   ||||||||| ||| |||||||||||||||| ||||||||||| |||  ||| ||||||||||||    
T  24111758 cttataattttagatatctattaatttttaatactatatcttataatttattaaatatcttgtataaattatgcattttaaa--ttatttttttcttcac 24111661  T
Q  111 taaaatttattttca 125  Q
    | || | ||||||||    
T  24111660 ttaattatattttca 24111646  T

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