View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751-Insertion-2 (Length: 510)
Name: NF5751-Insertion-2
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 3 - 198
Target Start/End: Original strand, 38611849 - 38612044
Alignment:
| Q |
3 |
caacaacaacaaactggctgtggatatctcaatgtttttgtttccaataatttactcttaacttacttgtataataactatgcaggtcgggaataacatg |
102 |
Q |
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| T |
38611849 |
caacaacaacaaactggctgtggatatctcaatgtttttgtttccaataatttactcttaacttacttgtataataactatgcaggtggggaataccatg |
38611948 |
T |
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| Q |
103 |
tatttttgtaatcggaaggagaaggtcaacttttcatttcatgttcccctttcaatttcaaactaatatatgtgtttttgcaataccatgtaagtg |
198 |
Q |
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| T |
38611949 |
tatttttgtaatcggaaggagaaggtcaacttttcatttcatgctcccctttcaatttcaaactaatatatgtgtttttgcaataccatgtaagtg |
38612044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 364 - 508
Target Start/End: Original strand, 38613476 - 38613620
Alignment:
| Q |
364 |
taattcttactaaatatttcacagagctcctttgctttgccaacaaattcaggaacttcatatctgaaggtgccgttccatctccttctttgttctctac |
463 |
Q |
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| T |
38613476 |
taattcttactaaatattccacagagctcctttgctttgccaacaaattcaggaacttcatatctgaaggtgccgttccatctccttctttgttctctac |
38613575 |
T |
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| Q |
464 |
ttttatttatttttctatctcgtagcaagtttggccatcatcatc |
508 |
Q |
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| T |
38613576 |
ttttatttatttttctatctcgtaacaagtttggccatcatcatc |
38613620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 242 - 372
Target Start/End: Original strand, 38612088 - 38612218
Alignment:
| Q |
242 |
acgcccttacatttgcacctcacttttaaattacaatgcccaacaccttcgctcattcttctggtgccgttattattggtgttatctcttgtatttttcc |
341 |
Q |
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| T |
38612088 |
acgcccttacatttgcacctcacttttaaattacaatgcccaacaccttcgctcattcttctggtgccgttattattggtgttatctcttgtattttttc |
38612187 |
T |
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| Q |
342 |
tgtttagaaaatgatctgatgttaattctta |
372 |
Q |
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| T |
38612188 |
tgtttagaaaatgatctgatgttaattctta |
38612218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 14667244 - 14667294
Alignment:
| Q |
268 |
taaattacaatgcccaacaccttcgctcattcttctggtgccgttattatt |
318 |
Q |
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| T |
14667244 |
taaattacaatgcctaacacctttcctcattcttctggcggcgttattatt |
14667294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 1012494 - 1012544
Alignment:
| Q |
268 |
taaattacaatgcccaacaccttcgctcattcttctggtgccgttattatt |
318 |
Q |
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| T |
1012494 |
taaattacaatgcctaacacctttcctcattcttctggcggcgttattatt |
1012544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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