View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751-Insertion-3 (Length: 400)
Name: NF5751-Insertion-3
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 388
Target Start/End: Original strand, 10069044 - 10069415
Alignment:
| Q |
17 |
catagcaaaaaattgcttcatcttcaatgcttccatttctgaaaattttcttggaaattttgtttcttttcttgcgaggaaagaaatcgagaaaagtggt |
116 |
Q |
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| T |
10069044 |
catagcaaaaaattgcttcatcttcaatgcttccatttctgaaaattttcttggaaattttgtttcttttcttgcaaggaaagaaatcgagagaagtggt |
10069143 |
T |
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| Q |
117 |
taggcaaagacaaggataggtagtggatgaatattaagtgtatgtctatgtgactttatatagttgcaatagaggatgaaaataaaataaagcaaatttt |
216 |
Q |
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| T |
10069144 |
taggcaaagacaaggataggtagtggatgaatattaagtgtatgtctatgcgactttatatagttgcaatagaggatgaaaataaaataaagcaaatttt |
10069243 |
T |
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| Q |
217 |
tgggattatttaatttctgatggccagcctgcctcaacttattgttttcgaggatttcaaggatgatgacaattgtcttgttgatgagagaggaaataag |
316 |
Q |
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| T |
10069244 |
tgggattatttaatttttgatggccagcctgcctcaacttattgttttcgaggatttcaaggatgatgacaattgtcttgttgatgagagaggaaataag |
10069343 |
T |
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| Q |
317 |
ttttggtggtttcattcttcttgtttttgagacgattaactaaacgcaacgcagatactcacatgcctcttt |
388 |
Q |
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| T |
10069344 |
ttttggtggtttcattcttcttgtttttgagacgattaactgaacgcaacgcagaaactcacatgcctcttt |
10069415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 16 - 182
Target Start/End: Original strand, 10106801 - 10106970
Alignment:
| Q |
16 |
ccatagcaaaaaattgcttcatcttcaatgcttccatttctg---aaaattttcttggaaattttgtttcttttcttgcgaggaaagaaatcgagaaaag |
112 |
Q |
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| T |
10106801 |
ccatagcaaaaatttgattcatcttcaatgcctccatttctataaaaaaaaaacttggaaattttctttcttttcttttgaggaaagaaagtgagaggaa |
10106900 |
T |
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| Q |
113 |
tggttaggcaaagacaaggataggtagtggatgaatattaagtgtatgtctatgtgactttatatagttg |
182 |
Q |
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| T |
10106901 |
tgggtaggcaaatacaaggataggtagtggatgaatattaagtgtatgtctatgtgactttatatagttg |
10106970 |
T |
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