View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751-Insertion-4 (Length: 385)
Name: NF5751-Insertion-4
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751-Insertion-4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 16943578 - 16943947
Alignment:
| Q |
16 |
attagcaatgaaaatgtgaggttacatggtttttatatatgcaacatatgagagttacttgttatacaagtaatcaatgaaaactagctaacttcgacta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16943578 |
attagcaatgaaaatgtgaggttacatggtttttatatatgcaacatatgggagttacttgttatacaagtaatcaacgaaaactagctaacttcgacta |
16943677 |
T |
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| Q |
116 |
aaatagctaacaaacttaacaaccagtcttaactaagttatcatatcaactaacttgaattaaaactaacatcttcccttaatttaagttatcaaacttc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16943678 |
aaatagctaacaaacttaacaaccagtcttaactaagttatcatatcaactaacttgaattaaaactaacatcttcccttaatttaagttatcaaacttc |
16943777 |
T |
|
| Q |
216 |
accattttaatcatacttctcaacttgacaaatctgtcaactttcacaacttttgttaaaaaatcagctggttgttcttcttttggacaatggataacct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16943778 |
accattttaatcatacttctcaacttgacaaatctgtcaactttcacaacttttgttaaaaaatcagctggttgttcttcttttggacaatggataacct |
16943877 |
T |
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| Q |
316 |
tcagcacatccttgttcacctgctctctgataaagtgaaaccttgtctctatgtgtttccttctaccatg |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
16943878 |
tcagcacatccttgttcacctgctctctgataaagtgaaaccttgtctctatgtgtttgcttctaccatg |
16943947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 17014243 - 17014612
Alignment:
| Q |
16 |
attagcaatgaaaatgtgaggttacatggtttttatatatgcaacatatgagagttacttgttatacaagtaatcaatgaaaactagctaacttcgacta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17014243 |
attagcaatgaaaatgtgaggttacatggtttttatatatgcaacatatgggagttacttgttatacaagtaatcaacgaaaactagctaacttcgacta |
17014342 |
T |
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| Q |
116 |
aaatagctaacaaacttaacaaccagtcttaactaagttatcatatcaactaacttgaattaaaactaacatcttcccttaatttaagttatcaaacttc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17014343 |
aaatagctaacaaacttaacaaccagtcttaactaagttatcatatcaactaacttgaattaaaactaacatcttcccttaatttaagttatcaaacttc |
17014442 |
T |
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| Q |
216 |
accattttaatcatacttctcaacttgacaaatctgtcaactttcacaacttttgttaaaaaatcagctggttgttcttcttttggacaatggataacct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17014443 |
accattttaatcatacttctcaacttgacaaatctgtcaactttcacaacttttgttaaaaaatcagctggttgttcttcttttggacaatggataacct |
17014542 |
T |
|
| Q |
316 |
tcagcacatccttgttcacctgctctctgataaagtgaaaccttgtctctatgtgtttccttctaccatg |
385 |
Q |
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| T |
17014543 |
tcagcacatccttgttcacctgctctctgataaagtgaaaccttgtctctatgtgtttgcttctaccatg |
17014612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 379
Target Start/End: Original strand, 23427807 - 23428022
Alignment:
| Q |
165 |
ctaacttgaattaaaa-ctaacatcttcccttaatttaagttatcaaacttcaccattttaatcatacttctcaacttgacaaatctgtcaactttcaca |
263 |
Q |
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|||||||||||||||| ||| |||| |||||||||| ||||| || | |||||||||| |||||| | ||| ||||||||||||||||||| || || |
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| T |
23427807 |
ctaacttgaattaaaaactagcatcctcccttaattcaagttctctagcttcaccattccaatcatgcatcttaacttgacaaatctgtcaatcttttca |
23427906 |
T |
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| Q |
264 |
acttttgttaaaaaatcagctggttgttcttcttttggacaatggataaccttcagcacatccttgttcacctgctctctgataaagtgaaaccttgtct |
363 |
Q |
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||||||| | | ||||| | ||||||| || | |||||||| || ||||| |||| | || ||||| || ||||||||||||||||| ||| || |
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| T |
23427907 |
tcttttgtaagcacatcagatagttgttcctcaatgggacaatgtatgaccttaagcatttatttattcacttgttctctgataaagtgaaatattgcct |
23428006 |
T |
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| Q |
364 |
ctatgtgtttccttct |
379 |
Q |
| |
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|||||||||| ||||| |
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| T |
23428007 |
ctatgtgtttacttct |
23428022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 355
Target Start/End: Original strand, 17507182 - 17507377
Alignment:
| Q |
161 |
tcaactaacttgaatta-aaactaacatcttcccttaatttaagttatcaaacttcaccattttaatcatacttctcaacttgacaaatctgtcaacttt |
259 |
Q |
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||||||||||||||||| |||||||||| || ||||||| ||||| | | |||||||||| |||||| ||||| | ||||||||| |||||| || |
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| T |
17507182 |
tcaactaacttgaattataaactaacattctctcttaattcaagttttttagcttcaccattccaatcatgcttcttattttgacaaatatgtcaatctt |
17507281 |
T |
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| Q |
260 |
cacaacttttgttaaaaaatcagctggttgttcttcttttggacaatggataaccttcagcacatccttgttcacctgctctctgataaagtgaaa |
355 |
Q |
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|||| ||| |||||| ||||| | ||||||| ||| ||| |||||| || ||||| | || || |||||||| || ||||| ||||||||||| |
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| T |
17507282 |
cacagcttctgttaacaaatccattagttgttcctctattgaacaatgtatgaccttaaacatttctttgttcacttgttctctaataaagtgaaa |
17507377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 8855262 - 8855318
Alignment:
| Q |
165 |
ctaacttgaattaaaactaacatcttcccttaatttaagttatcaaacttcaccatt |
221 |
Q |
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| T |
8855262 |
ctaacttgaattaaaactaacatcctcccttaattcaagttttccaacttcaccatt |
8855318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 3826583 - 3826491
Alignment:
| Q |
8 |
gtattctcattagcaatgaaaat-gtgaggttacatggtttttatata-tgcaacatatgagagttacttgttatacaagtaatcaatgaaaacta |
101 |
Q |
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||||||||||| ||||||||||| |||| ||| |||| |||||||| | | ||||||| |||||||||| ||||||||||||||| ||||||| |
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| T |
3826583 |
gtattctcattcgcaatgaaaattgtgacgttgcatg---tttatatactactacatatgtgagttacttgctatacaagtaatcaaccaaaacta |
3826491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 255
Target Start/End: Complemental strand, 2207202 - 2207016
Alignment:
| Q |
70 |
ttacttgttatacaagtaatcaatgaaaactagctaacttcgactaaaatagctaacaaacttaacaaccagtcttaactaagttatcatatcaactaac |
169 |
Q |
| |
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|||||||| || | |||||||| ||||||| |||||||| || || ||| |||||| |||||||| || | |||| | |||| ||| |||||||| |
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| T |
2207202 |
ttacttgtcatgcgagtaatcatccaaaactaactaacttccacagaagtagttaacaagcttaacaaacaattttaaacactttattataacaactaac |
2207103 |
T |
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| Q |
170 |
ttgaattaaaa-ctaacatcttcccttaatttaagttatcaaacttcaccattttaatcatacttctcaacttgacaaatctgtcaa |
255 |
Q |
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||||||||||| ||| |||| ||||| |||| ||||| || | ||||||||| |||||||||||| || |||| |||| |||||| |
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| T |
2207102 |
ttgaattaaaacctaccatcctccctaaattcaagttctctacattcaccattccaatcatacttcttaatttgataaatatgtcaa |
2207016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 25632749 - 25632708
Alignment:
| Q |
164 |
actaacttgaattaaaactaacatcttcccttaatttaagtt |
205 |
Q |
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| T |
25632749 |
actaacttgaattaaaactaacatccttccttaattcaagtt |
25632708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 24650803 - 24650715
Alignment:
| Q |
161 |
tcaactaacttgaatt-aaaactaacatcttcccttaatttaagttatcaaacttcaccattttaatcatacttctcaacttgacaaat |
248 |
Q |
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|||||||||||||||| |||||||| ||| |||||||||| | || || | |||||||||| ||| |||||| | |||||||||||| |
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| T |
24650803 |
tcaactaacttgaattaaaaactaatatcctcccttaattccaattttctagcttcaccattccaattatactttttaacttgacaaat |
24650715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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