View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5751-Insertion-6 (Length: 335)
Name: NF5751-Insertion-6
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751-Insertion-6 |
 | |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold1526 (2 HSPs) |
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| [»] scaffold0642 (2 HSPs) |
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| [»] scaffold0105 (2 HSPs) |
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| [»] scaffold0345 (2 HSPs) |
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| [»] scaffold0016 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 95 - 335
Target Start/End: Original strand, 3379033 - 3379283
Alignment:
| Q |
95 |
atgttaacaaaactcaatttcctcggttgtgtaacgattgaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaataaattt |
194 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3379033 |
atgtttacaaaactcaatttcctcggttgtgtaacgattaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcattt |
3379132 |
T |
|
| Q |
195 |
caagttatggattgttttccttgannnnnnnnnncttttcaaacatccaatgtgtatttcaatggattatgtgtaaatgtcatctttcg----------- |
283 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
3379133 |
caagttatggattgttttccttga-tttttttttcttttcaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctgtgtatgc |
3379231 |
T |
|
| Q |
284 |
tactgttaagctacttcttctaggtgttctgccatatcactgtgaagctact |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3379232 |
tactgttaagctacttcttctaggtgttctgccatatcactgtgaagctact |
3379283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 3378957 - 3379017
Alignment:
| Q |
8 |
cttactaacctaatttgattgcccttcaacaaaatttggactttgcaacttcatgcgcacc |
68 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3378957 |
cttactaacctaatttgattacccttcaacaaaatttggactttgcaacttcatgcacacc |
3379017 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 95 - 335
Target Start/End: Original strand, 44496300 - 44496551
Alignment:
| Q |
95 |
atgttaacaaaactcaatttcctcggttgtgtaacgattgaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaataaattt |
194 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
44496300 |
atgtttacaaaactcaatttcctcggttgtgtaacgattaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcattt |
44496399 |
T |
|
| Q |
195 |
caagttatggattgttttccttgannnnnnnnnncttttcaaacatccaatgtgtatttcaatggattatgtgtaaatgtcatctttcg----------- |
283 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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|
| T |
44496400 |
caatttatggattgttttccttgaatttttttttcttttcaaacatccaatgtgtatttcaatggattatatataaatgtcatctttcgtctgtgtatgc |
44496499 |
T |
|
| Q |
284 |
tactgttaagctacttcttctaggtgttctgccatatcactgtgaagctact |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44496500 |
tactgttaagctacttcttctaggtgttctgccatatcactgtgaagctact |
44496551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 44496223 - 44496283
Alignment:
| Q |
8 |
cttactaacctaatttgattgcccttcaacaaaatttggactttgcaacttcatgcgcacc |
68 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44496223 |
cttactaacctaatttgattacccttcaacaaaatttggactttgcaacttcatgcgcacc |
44496283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1526 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: scaffold1526
Description:
Target: scaffold1526; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 95 - 335
Target Start/End: Complemental strand, 479 - 229
Alignment:
| Q |
95 |
atgttaacaaaactcaatttcctcggttgtgtaacgattgaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaataaattt |
194 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
479 |
atgtttacaaaactcaatttcctcggttgtgtaacgattaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcattt |
380 |
T |
|
| Q |
195 |
caagttatggattgttttccttgannnnnnnnnncttttcaaacatccaatgtgtatttcaatggattatgtgtaaatgtcatctttcg----------- |
283 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
379 |
caagttatggattgttttccttga-tttttttttcttttcaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctgtgtatgc |
281 |
T |
|
| Q |
284 |
tactgttaagctacttcttctaggtgttctgccatatcactgtgaagctact |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
280 |
tactgttaagctacttcttctaggtgttctgccatatcactttgaagctact |
229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1526; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 556 - 496
Alignment:
| Q |
8 |
cttactaacctaatttgattgcccttcaacaaaatttggactttgcaacttcatgcgcacc |
68 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
556 |
cttactaacctaatttgattacccttcaacaaaatttggactttgcaacttcatgcgcacc |
496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 112 - 335
Target Start/End: Original strand, 4832 - 5066
Alignment:
| Q |
112 |
tttcctcggttgtgtaacgattgaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaataaatttcaagttatggattgttt |
211 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
4832 |
tttcctcggttgtgtaacgattaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcatttcatgttatggattgttt |
4931 |
T |
|
| Q |
212 |
tccttgannnnnnnnnncttttcaaacatccaatgtgtatttcaatggattatgtgtaaatgtcatctttcg-----------tactgttaagctacttc |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4932 |
tccttgattttttttttcttttcaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctgtgtatgctactgttaagctacttc |
5031 |
T |
|
| Q |
301 |
ttctaggtgttctgccatatcactgtgaagctact |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
5032 |
ttctaggtgttctgccatatcactgtgaagctact |
5066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 4765 - 4825
Alignment:
| Q |
8 |
cttactaacctaatttgattgcccttcaacaaaatttggactttgcaacttcatgcgcacc |
68 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4765 |
cttactaacctaatttgattacccttcaacaaaatttggactttgcaacttcatgcacacc |
4825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 112 - 335
Target Start/End: Complemental strand, 24236 - 24002
Alignment:
| Q |
112 |
tttcctcggttgtgtaacgattgaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaataaatttcaagttatggattgttt |
211 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
24236 |
tttcctcggttgtgtaacgattaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcatttcatgttatggattgttt |
24137 |
T |
|
| Q |
212 |
tccttgannnnnnnnnncttttcaaacatccaatgtgtatttcaatggattatgtgtaaatgtcatctttcg-----------tactgttaagctacttc |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24136 |
tccttgattttttttttcttttcaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctgtgtatgctactgttaagctacttc |
24037 |
T |
|
| Q |
301 |
ttctaggtgttctgccatatcactgtgaagctact |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
24036 |
ttctaggtgttctgccatatcactgtgaagctact |
24002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 24304 - 24244
Alignment:
| Q |
8 |
cttactaacctaatttgattgcccttcaacaaaatttggactttgcaacttcatgcgcacc |
68 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24304 |
cttactaacctaatttgattacccttcaacaaaatttggactttgcaacttcatgcacacc |
24244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 112 - 335
Target Start/End: Original strand, 14745 - 14979
Alignment:
| Q |
112 |
tttcctcggttgtgtaacgattgaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaataaatttcaagttatggattgttt |
211 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
14745 |
tttcctcggttgtgtaacgattaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcatttcatgttatggattgttt |
14844 |
T |
|
| Q |
212 |
tccttgannnnnnnnnncttttcaaacatccaatgtgtatttcaatggattatgtgtaaatgtcatctttcg-----------tactgttaagctacttc |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14845 |
tccttgtatttttttttcttttcaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctgtgtatgctactgttaagctacttc |
14944 |
T |
|
| Q |
301 |
ttctaggtgttctgccatatcactgtgaagctact |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
14945 |
ttctaggtgttctgccatatcactgtgaagctact |
14979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 14677 - 14737
Alignment:
| Q |
8 |
cttactaacctaatttgattgcccttcaacaaaatttggactttgcaacttcatgcgcacc |
68 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14677 |
cttactaacctaatttgattacccttcaacaaaatttggactttgcaacttcatgcacacc |
14737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 95 - 335
Target Start/End: Complemental strand, 53162 - 52913
Alignment:
| Q |
95 |
atgttaacaaaactcaatttcctcggttgtgtaacgattgaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaataaattt |
194 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
53162 |
atgtttacaaaactcaatttcctcggttgtgtaacgattaagttatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcattt |
53063 |
T |
|
| Q |
195 |
caagttatggattgttttccttgannnnnnnnnncttttcaaacatccaatgtgtatttcaatggattatgtgtaaatgtcatctttcg----------- |
283 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
53062 |
caagttatggattgttttccttgattttttttttc--ttcaaacatccaatgtgtattttaatggattatatgtaaatgtcatctttcgtctgtgtatac |
52965 |
T |
|
| Q |
284 |
tactgttaagctacttcttctaggtgttctgccatatcactgtgaagctact |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
52964 |
tactgttaagctacttcttctaggtgttctgccatatcactatgaagctact |
52913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 53242 - 53182
Alignment:
| Q |
8 |
cttactaacctaatttgattgcccttcaacaaaatttggactttgcaacttcatgcgcacc |
68 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||| |||||||| |||| |
|
|
| T |
53242 |
cttactaacctaatttgattacccttcagcaaaatttggactttgcaccttcatgcacacc |
53182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 36931799 - 36931755
Alignment:
| Q |
291 |
aagctacttcttctaggtgttctgccatatcactgtgaagctact |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36931799 |
aagctacttcttctaggtgttctgccatatcaccgtgaagctact |
36931755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 28335459 - 28335417
Alignment:
| Q |
142 |
tgtactgtgaagggcattgttagtatgcaagagccatgtcaat |
184 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
28335459 |
tgtattgtgaagggcattgttagtatgcgagagccatgccaat |
28335417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 44787414 - 44787372
Alignment:
| Q |
142 |
tgtactgtgaagggcattgttagtatgcaagagccatgtcaat |
184 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
44787414 |
tgtattgtgaagggcattgttagtatgcgagagccatgccaat |
44787372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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