View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5751-Insertion-7 (Length: 312)

Name: NF5751-Insertion-7
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5751-Insertion-7
NF5751-Insertion-7
[»] chr3 (1 HSPs)
chr3 (8-312)||(39401146-39401451)


Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 8 - 312
Target Start/End: Original strand, 39401146 - 39401451
Alignment:
Q  8 gaattgcaaaatttgctc-caatagagacaatgacatcttcagtgattgagggtggacacgatgaggctatacatgagccttcggatttgatcgcagcaa 106  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39401146 gaattgcaaaatttgctcacaatagagacaatgacatcttcagtgattgagggtggacacgatgaggctatacatgagccttcggatttgatcgtagcaa 39401245  T
Q  107 atatgaatcctacggttggaaatctttcgcttcctaatgaaacattcttaaaagctgcaatctctctcaaggatgaggtatgtgttgatgaattttagtt 206  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39401246 atatgaatcctacggttggaaatctttcacttcctaatgaaacattcttaaaagctgcaatctctctcaaggatgaggtatgtgttgatgaattttagtt 39401345  T
Q  207 cattttgtttcatttcttgtttacttagtagcacgaaggcatgtatggtgtgggacacaacataagtacatgtaattacattgttattatgtgtttcgtg 306  Q
    |||||||||||||||||||||||||| ||||||| ||||| |||| ||||| | |||||||||||||||||||||||||||||||| ||| |||||||||    
T  39401346 cattttgtttcatttcttgtttactttgtagcaccaaggcgtgtaaggtgtcgaacacaacataagtacatgtaattacattgttagtatatgtttcgtg 39401445  T
Q  307 ttggtg 312  Q
    ||||||    
T  39401446 ttggtg 39401451  T

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