View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751_high_11 (Length: 410)
Name: NF5751_high_11
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 54 - 392
Target Start/End: Complemental strand, 15539621 - 15539275
Alignment:
| Q |
54 |
aaatattgggtttt-aatccctcttgtattattaaaattgtgtattacattaaaaattcaacatctcaattataccaaagtggatcctac-------taa |
145 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| ||| |
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| T |
15539621 |
aaatattgggttctcaatccctcttgtattattaaaattgtgtattacattaaaaattcaacatctcaatcatagcaaagaggatcctacatgtccctaa |
15539522 |
T |
|
| Q |
146 |
tatcaccattccaattatagcaaagagtttggcctcgatgaatcaaacatggccctgctttcactatataataattaagagtatcatctttttcatcatc |
245 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15539521 |
tatcaccattccaattatagcaaagagtttggcttcgttgagtcaaacatggccctgctttcactatataataattaagagtatcatctttttcatcatc |
15539422 |
T |
|
| Q |
246 |
tctagattgtacaaaaacattaaacttacgttcctcttgattaccattccaattaaacagacaccagaattttgtgccgccaaaaaagttatgatcaaat |
345 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
15539421 |
tctagattgtacaaaaacataaaacttacgttcctcttgattaccattccaattaaacaaacaccagaattttgtgccaccaaaaaagttatgatcaaat |
15539322 |
T |
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| Q |
346 |
ttccaaccaaaactctcaccatgatgaagattatgttctccaagatc |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15539321 |
ttccaaccaaaactctcaccatgatgaagattatgttctccaagatc |
15539275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 14774823 - 14774852
Alignment:
| Q |
6 |
agagaaaagaagtacaaaagagaaaagggg |
35 |
Q |
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| T |
14774823 |
agagaaaagaagtacaaaagagaaaagggg |
14774852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 580654 - 580625
Alignment:
| Q |
6 |
agagaaaagaagtacaaaagagaaaagggg |
35 |
Q |
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| T |
580654 |
agagaaaagaagtacaaaagagaaaagggg |
580625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 48710847 - 48710818
Alignment:
| Q |
6 |
agagaaaagaagtacaaaagagaaaagggg |
35 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
48710847 |
agagaaaagaagtacaaaagagaaaagggg |
48710818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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