View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5751_high_16 (Length: 363)
Name: NF5751_high_16
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_high_16 |
 | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 346
Target Start/End: Complemental strand, 883932 - 883609
Alignment:
| Q |
13 |
atactcaacgaaattaaagggtgctagatagtggtcaccaccattattgtttccaaatcaatagaaatattttctctagaaaagatagaagaaatggctg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
883932 |
atactcaacgaaattaaagggtgctagatagtggtcaccaccattattgtttccaaatcaatagaaatattttctctagaaaagatagaagaaatggctg |
883833 |
T |
|
| Q |
113 |
cagcagaaggagtgagtctgaaccatatagctcgagagtccaccgacgtaaaaagactctccaaattctaccaagaggttagttagcatttagcctatga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
883832 |
cagcagaaggagtgagtctgaaccatatagctcgagagtccaccgacgtaaaaagactctccaaattctaccaagaggttagttagcatttaacctatga |
883733 |
T |
|
| Q |
213 |
aactcagacactcatcttgtttgataccaacacagcacttacacatataatcacattgaattatgtaactttttaaaattattatttgtatcgattgtct |
312 |
Q |
| |
|
| ||||||||||||||||||| ||| |||| ||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
883732 |
a----------tcatcttgtttgataccaatacaacactgacaaatgtagtcacattgaattatgtaactttttaaaattattatttgtatcgattgtct |
883643 |
T |
|
| Q |
313 |
aatgttcgtgtatgtgttcctgcttcatatcact |
346 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
883642 |
aatgttcgtgtatgtgttcatgcttcatatcact |
883609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 38749571 - 38749615
Alignment:
| Q |
253 |
acacatataatcacattgaattatgtaactttttaaaattattat |
297 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||| |||||||||| |
|
|
| T |
38749571 |
acacatataattacattgaattatgtcattttttcaaattattat |
38749615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 99944 - 99900
Alignment:
| Q |
253 |
acacatataatcacattgaattatgtaactttttaaaattattat |
297 |
Q |
| |
|
||||||||||| |||||||||||||| | ||| |||||||||||| |
|
|
| T |
99944 |
acacatataattacattgaattatgttattttctaaaattattat |
99900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 3677835 - 3677783
Alignment:
| Q |
255 |
acatataatcacattgaattatgtaactttttaaaattattatttgtatcgat |
307 |
Q |
| |
|
||||||||| |||| ||||||||| | ||||||||||||||| |||| ||||| |
|
|
| T |
3677835 |
acatataattacatagaattatgtgattttttaaaattattaattgtgtcgat |
3677783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 18013077 - 18013125
Alignment:
| Q |
248 |
cacttacacatataatcacattgaattatgtaactttttaaaattatta |
296 |
Q |
| |
|
|||| ||||||||||| ||| |||||||||||| ||||| ||||||||| |
|
|
| T |
18013077 |
cactgacacatataattacactgaattatgtaatttttttaaattatta |
18013125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University