View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751_high_2 (Length: 820)
Name: NF5751_high_2
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 702; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 18 - 811
Target Start/End: Original strand, 49768043 - 49768833
Alignment:
| Q |
18 |
ttaacaacgtagaaatttgtaacgctataaagaagaagttggtgactctaaacagaatacataatacaaaataatacatacatggaaggtggtgaactga |
117 |
Q |
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| T |
49768043 |
ttaacgacgtagaaatttgtaacgctataaataagaagttggtgactctaaacagagtacataatacaaaataatacatacatggaaggtggtgaactga |
49768142 |
T |
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| Q |
118 |
gagtggcgagtggacgcgtagggagctccagcatatggagaagtggtgcagttgatgtattttcaggatcgtcaagacgggatgatgatgaacaagagct |
217 |
Q |
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| T |
49768143 |
gagtggcgagtggacgcgtagggagctccagcatatggagaagtggtgcagttgatgtattttcaggatcgtcaagaagggatgatgatgaacaagagct |
49768242 |
T |
|
| Q |
218 |
tcaatgggctgctattgagaagcttccgacctatctacgcatgactagaggtatactgaatgaatcacaaagtgaacagcctatagagattgatatcaac |
317 |
Q |
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| T |
49768243 |
tcaatgggctgctattgagaagcttccgacctatctacgcatgactagaggtatactgaatgaatcacaaagtgaacagcctatagagattgatatcaac |
49768342 |
T |
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| Q |
318 |
aaacttggaccactgcagagaaagaatttagtggagagacttgtcaagattgccgaggaagataatgagaagttcttgttgaagttaagacaacgcattg |
417 |
Q |
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| T |
49768343 |
aaacttggaccactgcagaggaagaatttagtggagagacttgtcaagattgccgaggaagataatgagaagttcttgttgaagttaagacaacgcattg |
49768442 |
T |
|
| Q |
418 |
atcggtatgtatgccaccaacctatctagcaccgacatttcaaattgaatgcatgtttattgcgtagattaagataggacattttcttaaattataaaca |
517 |
Q |
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| T |
49768443 |
atcggtatgtatgctaccaacttatctagcaccgacatttcaaattgaatgcatgtttattgcgttgattaagataggacattttcttaaattataaaca |
49768542 |
T |
|
| Q |
518 |
aattccgtgtctgtgtaaatgtttc-aacgcagtactaacttgagttgttgttttgtgtctgtgtttgttctagttttgaaatgaatcttaaagaaatta |
616 |
Q |
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| T |
49768543 |
aattccgtgtctgtgtaaatgtttctaacgcagtactaacttgagttgttgttttgtgtctgtgtttgttctagttttgaaatgaatcttaaagaaatta |
49768642 |
T |
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| Q |
617 |
tgtaaggttttaagtagtggttgcatcgtaattcttgatatttgacagttgaattactgtcaaatgcagttgatacaatcttggttgtggttgcagagat |
716 |
Q |
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| T |
49768643 |
tgtaaggttttaagtagtggttgcatcgtaattcttgatatttg--tgttgaattactgtcaaatgcagttgatacaatattggttgtggttgc-gagat |
49768739 |
T |
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| Q |
717 |
atnnnnnnntcgacgatgttttggccaaatagtgataatgtaccattttttgaaactctggcatcatgtgtagaggaatttacaagtttgtgtaa |
811 |
Q |
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| T |
49768740 |
at-aaaaaatcgacgatgttttggccaaatagtgataatgtaccattttttgaaactctggcatcatgtgtagaggaatttacaagtttgtgtaa |
49768833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 548 - 711
Target Start/End: Complemental strand, 3829667 - 3829504
Alignment:
| Q |
548 |
agtactaacttgagttgttgttttgtgtctgt--gtttgttctagttttgaaatgaatcttaaagaaattatgtaaggttttaagtagtggttgcatcgt |
645 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||| |||||| ||||||| ||||| |||||||||||||||||||| ||||||| |||| |
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| T |
3829667 |
agtactaacttgagttgttgttttgtgtctgtacgagtgttctaattttgagatgaatcataaaggaattatgtaaggttttaagtgttggttgcgtcgt |
3829568 |
T |
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| Q |
646 |
aattcttgatatttgacagttgaattactgtcaaatgcagttgatacaatcttggttgtggttgca |
711 |
Q |
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| T |
3829567 |
aattcttgatatttg--agtagaattacgggcaaatgcagttgatagtatcttggtcgtggttgca |
3829504 |
T |
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