View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5751_high_21 (Length: 326)
Name: NF5751_high_21
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_high_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 314
Target Start/End: Complemental strand, 6117471 - 6117166
Alignment:
| Q |
17 |
gttaaaaaccctaccataaaatatggtataggaaaaaagagtgtagtgcaaagaaacaacaacacaacataaactacacaatcc-------tatgagagc |
109 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6117471 |
gttaaaaaccttaccataaaatatggtataggaaaaaagagtgtagtgcaaagaaacaacaacacaacataaactacacaatccctgaaaatatgagagc |
6117372 |
T |
|
| Q |
110 |
aatagaaacgcatgcgagaagacaaattaatgcaattattccatctttaaacttccaggaaacaatgtccatattcttgaaagctcacacaaccaagcta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6117371 |
aatagaaacgcatgcgagaagacaaattaatgcaattattccatctttaaacttccaggaaacaatgtccatattcttgaaagctcacacaaccaagcta |
6117272 |
T |
|
| Q |
210 |
gagtcacttcttctt-ccctgaagcttgatgaatgaaaactgcacctttttgtcttcaatgggaccttcaaataaatgtaccatcatcaaataaattaat |
308 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6117271 |
gagtcacttcttcttcccctgaagcttgatgaatgaaaactgcacctttttgtcttcaatagaaccttcaaataaatgtaccatcatcaaaaaaattaat |
6117172 |
T |
|
| Q |
309 |
cagaat |
314 |
Q |
| |
|
|||||| |
|
|
| T |
6117171 |
cagaat |
6117166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 13753471 - 13753411
Alignment:
| Q |
18 |
ttaaaaaccctaccataaaa-tatggtataggaaaaaagagtgtagtgcaaagaaacaaca |
77 |
Q |
| |
|
||||||||| | |||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13753471 |
ttaaaaaccttgccataaaagtatggtataggaaaaaagaatgtagtgcaaagaaacaaca |
13753411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 13753107 - 13753066
Alignment:
| Q |
181 |
tattcttgaaagctcacacaaccaagctagagtcacttcttc |
222 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13753107 |
tattcttgaaagctcccacaaccaagctagagtcacttcttc |
13753066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University