View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5751_high_26 (Length: 285)
Name: NF5751_high_26
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_high_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 52953433 - 52953689
Alignment:
| Q |
12 |
atgaattacaaagtgtttggaaattgtcaagatgattggagttttgcacagaaattgattttgaaaaggtgtgagcctttacctagaagaaggtgttttg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52953433 |
atgaattacaaagtgtttggaaattgtcaagatgattggagttttgcacagaaattgatttcgaaaaggtgtgagcctttacctagaagaaggtgttttg |
52953532 |
T |
|
| Q |
112 |
ctaaatctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52953533 |
ctaaatctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttg |
52953632 |
T |
|
| Q |
212 |
taagaattttgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctt |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52953633 |
taagaattttgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctt |
52953689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 268
Target Start/End: Complemental strand, 31904093 - 31903837
Alignment:
| Q |
12 |
atgaattacaaagtgtttggaaattgtcaagatgattggagttttgcacagaaattgattttgaaaaggtgtgagcctttacctagaagaaggtgttttg |
111 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
31904093 |
atgaattacaaagtatttggaaattgtcaagatgattggagttatgctcagaaattgattttgaaagggtgtgagcctttaccaagaagaaggtgttttg |
31903994 |
T |
|
| Q |
112 |
ctaaatctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31903993 |
ctaaatctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaaacctgttagtaacaaaactgttaattggagtggttttagttg |
31903894 |
T |
|
| Q |
212 |
taagaattttgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctt |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31903893 |
taagaattttgagtgtttgaatggtaagaaattgaataggggttgcatgcattgctt |
31903837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 139 - 268
Target Start/End: Complemental strand, 31922101 - 31921972
Alignment:
| Q |
139 |
atcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31922101 |
atcttcatccttttccaacttcactttggaaacctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
31922002 |
T |
|
| Q |
239 |
gaaattgaatagaggttgcatgcattgctt |
268 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |
|
|
| T |
31922001 |
gaaattgaataggggttgcatgcattgctt |
31921972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 139 - 268
Target Start/End: Original strand, 31673573 - 31673702
Alignment:
| Q |
139 |
atcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31673573 |
atcttcatccttttccaacttcactttggaaacctgttagcaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
31673672 |
T |
|
| Q |
239 |
gaaattgaatagaggttgcatgcattgctt |
268 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |
|
|
| T |
31673673 |
gaaattgaataggggttgcatgcattgctt |
31673702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 252
Target Start/End: Original strand, 7760340 - 7760544
Alignment:
| Q |
42 |
gatgattggagttttgcacagaaattgattttgaaaaggtgtgagcctttacctagaagaaggtgttttgctaaatctgtttcttctaaggtaaattatc |
141 |
Q |
| |
|
|||||||||||| | || |||||| |||| || ||| |||||||||||||||||||||||||||||||| | ||| ||||||| || | | | | |
|
|
| T |
7760340 |
gatgattggagtgtagctcagaaactgatcttaaaagggtgtgagcctttacctagaagaaggtgtttttcaaaaactgtttc----aaaatcaggtttt |
7760435 |
T |
|
| Q |
142 |
ttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaagaa |
241 |
Q |
| |
|
|| ||||||||| ||| |||||||||||| || |||| || ||| |||||||||||||||| | |||||||| |||||| |||||||| || ||||| |
|
|
| T |
7760436 |
tt--tccttttcctgtttctctttggaagcctcttggtaataacacttttaattggagtggtttgaattgtaagagttttgaatgtttgaaaggaaagaa |
7760533 |
T |
|
| Q |
242 |
attgaatagag |
252 |
Q |
| |
|
||||| ||||| |
|
|
| T |
7760534 |
attgagtagag |
7760544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 28959879 - 28959958
Alignment:
| Q |
173 |
tgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaagaaattgaatagag |
252 |
Q |
| |
|
|||| |||| || ||| |||||||||||||||| | |||||||| |||||| |||||||| || |||||||||| ||||| |
|
|
| T |
28959879 |
tgttggtaataacacttttaattggagtggtttgaattgtaagagttttgaatgtttgaaaggaaagaaattgagtagag |
28959958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University