View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5751_high_5 (Length: 579)

Name: NF5751_high_5
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5751_high_5
NF5751_high_5
[»] chr5 (5 HSPs)
chr5 (159-332)||(40684732-40684905)
chr5 (1-158)||(21249362-21249519)
chr5 (42-92)||(21249511-21249561)
chr5 (28-74)||(21249579-21249625)
chr5 (111-156)||(21249633-21249678)
[»] chr1 (16 HSPs)
chr1 (27-160)||(10824585-10824718)
chr1 (28-156)||(37189565-37189693)
chr1 (27-159)||(22683140-22683272)
chr1 (27-141)||(18844476-18844590)
chr1 (27-160)||(19056367-19056500)
chr1 (40-160)||(18844677-18844798)
chr1 (33-158)||(37189368-37189492)
chr1 (27-157)||(15825737-15825865)
chr1 (27-158)||(19056150-19056281)
chr1 (30-143)||(10824383-10824496)
chr1 (27-115)||(22683357-22683445)
chr1 (40-92)||(22683290-22683342)
chr1 (39-92)||(10824514-10824567)
chr1 (51-92)||(19056307-19056348)
chr1 (42-92)||(18844608-18844658)
chr1 (47-92)||(37189496-37189541)
[»] chr8 (17 HSPs)
chr8 (27-159)||(13884488-13884620)
chr8 (29-158)||(13884706-13884835)
chr8 (28-160)||(42126380-42126512)
chr8 (27-159)||(29714541-29714673)
chr8 (27-140)||(2554066-2554179)
chr8 (28-158)||(42126601-42126731)
chr8 (27-160)||(11867898-11868030)
chr8 (47-158)||(29714778-29714889)
chr8 (61-159)||(43416262-43416360)
chr8 (30-109)||(14996678-14996758)
chr8 (39-89)||(2554002-2554052)
chr8 (47-92)||(14996608-14996653)
chr8 (27-119)||(15862540-15862632)
chr8 (39-92)||(29714691-29714744)
chr8 (32-140)||(26745959-26746067)
chr8 (32-140)||(26745281-26745389)
chr8 (47-92)||(42126532-42126577)
[»] chr2 (21 HSPs)
chr2 (27-158)||(16973064-16973195)
chr2 (27-159)||(2916377-2916509)
chr2 (27-156)||(44594454-44594583)
chr2 (40-160)||(44594246-44594367)
chr2 (28-159)||(40987656-40987787)
chr2 (27-140)||(38982773-38982886)
chr2 (27-159)||(16973280-16973412)
chr2 (47-160)||(11533680-11533794)
chr2 (28-167)||(13559519-13559657)
chr2 (27-158)||(38982557-38982688)
chr2 (27-155)||(2916593-2916721)
chr2 (28-133)||(24125876-24125975)
chr2 (1-152)||(40987836-40987987)
chr2 (28-133)||(24126146-24126245)
chr2 (91-158)||(24125670-24125737)
chr2 (39-92)||(16973213-16973266)
chr2 (39-92)||(44594383-44594436)
chr2 (28-105)||(13559357-13559434)
chr2 (39-92)||(38982702-38982755)
chr2 (47-92)||(2916526-2916571)
chr2 (47-92)||(24125812-24125857)
[»] scaffold0060 (1 HSPs)
scaffold0060 (27-159)||(22921-23053)
[»] chr7 (17 HSPs)
chr7 (28-160)||(28715640-28715772)
chr7 (47-160)||(30862216-30862329)
chr7 (27-160)||(28715858-28715991)
chr7 (27-159)||(41985909-41986041)
chr7 (27-167)||(6474271-6474412)
chr7 (27-160)||(6474497-6474629)
chr7 (28-141)||(47373679-47373792)
chr7 (27-155)||(30862436-30862564)
chr7 (27-158)||(47373462-47373595)
chr7 (86-159)||(41986183-41986256)
chr7 (32-140)||(38408121-38408229)
chr7 (32-140)||(6271188-6271296)
chr7 (42-92)||(41986058-41986108)
chr7 (51-140)||(6270237-6270326)
chr7 (47-92)||(47373612-47373657)
chr7 (104-160)||(22226665-22226721)
chr7 (32-140)||(38407450-38407558)
[»] chr3 (14 HSPs)
chr3 (27-159)||(51663466-51663598)
chr3 (28-159)||(40244624-40244756)
chr3 (28-156)||(46003465-46003593)
chr3 (27-158)||(51663250-51663381)
chr3 (28-159)||(20537925-20538056)
chr3 (27-157)||(20538150-20538280)
chr3 (27-165)||(46003241-46003379)
chr3 (47-155)||(40364194-40364301)
chr3 (27-159)||(40364040-40364172)
chr3 (96-159)||(40244873-40244936)
chr3 (39-92)||(46003393-46003446)
chr3 (47-92)||(20538076-20538121)
chr3 (47-92)||(51663399-51663444)
chr3 (76-144)||(48867469-48867537)
[»] scaffold0781 (1 HSPs)
scaffold0781 (47-158)||(5271-5382)
[»] chr6 (15 HSPs)
chr6 (47-158)||(2216814-2216925)
chr6 (27-159)||(24798624-24798756)
chr6 (32-160)||(24798843-24798971)
chr6 (28-153)||(11643754-11643879)
chr6 (64-160)||(24690353-24690449)
chr6 (47-160)||(11643985-11644097)
chr6 (28-158)||(18494949-18495079)
chr6 (28-160)||(18494732-18494862)
chr6 (72-156)||(24690607-24690691)
chr6 (47-92)||(11643898-11643943)
chr6 (51-140)||(9954825-9954914)
chr6 (32-140)||(9955590-9955698)
chr6 (41-93)||(24798770-24798822)
chr6 (39-92)||(18494878-18494931)
chr6 (39-92)||(24690504-24690557)
[»] chr4 (13 HSPs)
chr4 (27-160)||(39161286-39161419)
chr4 (27-171)||(39161503-39161647)
chr4 (27-166)||(55173469-55173608)
chr4 (47-159)||(50509364-50509476)
chr4 (27-160)||(47097016-47097146)
chr4 (39-158)||(55173334-55173454)
chr4 (28-160)||(47096798-47096928)
chr4 (47-155)||(37996068-37996176)
chr4 (111-158)||(2623451-2623498)
chr4 (57-140)||(9738136-9738219)
chr4 (39-92)||(47096947-47097001)
chr4 (40-92)||(39161436-39161488)
chr4 (66-140)||(9738937-9739011)
[»] scaffold0034 (1 HSPs)
scaffold0034 (42-106)||(108047-108111)
[»] scaffold0036 (1 HSPs)
scaffold0036 (32-141)||(61042-61151)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 3e-86; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 159 - 332
Target Start/End: Complemental strand, 40684905 - 40684732
Alignment:
Q  159 tactttttataataaaaaatcacttttatacttcctcatggtaatttttcagtgtaatttatggcgtggtgtggccttatctcgtgccactgattgaaca 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40684905 tactttttataataaaaaatcacttttatacttcctcatggtaatttttcagtgtaatttatggcgtggtgtggccttatctcgtgccactgattgaaca 40684806  T
Q  259 gttactagaatatacagacaaatttggaagaataagtttcaaatggatgacgatatttctattgtggaataaca 332  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40684805 gttactaaaatatacaaacaaatttggaagaataagtttcaaatggatgacgatatttctattgtgcaataaca 40684732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 21249519 - 21249362
Alignment:
Q  1 attgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatag 100  Q
    |||| ||||||||||||||       ||||||||||| ||||||| | |||||||||||||||||||||||||||||||| |||||||||||| |||||     
T  21249519 attggtacataagttaacatttttttgagagaaactaacagaaaggattaaaactagtaacgaagcaaaacataggggactaaattggtacaatttataa 21249420  T
Q  101 ttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcc 158  Q
    ||||||||| ||||||||||||| ||||| | ||||||||| | ||||||||||||||    
T  21249419 ttaggggaccaaattgagacaatcaattacggtaagggaccaggtgattgaataagcc 21249362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 21249561 - 21249511
Alignment:
Q  42 aaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    |||| |||||||||||||||  ||||||||||| |||||||||||||||||    
T  21249561 aaaggactaaaactagtaacagagcaaaacataagggaccaaattggtaca 21249511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 21249579 - 21249625
Alignment:
Q  28 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacata 74  Q
    |||||||||| ||||||| |||||||||| ||||| |||||||||||    
T  21249579 agagaaactaacagaaaggactaaaactaataacggagcaaaacata 21249625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 21249633 - 21249678
Alignment:
Q  111 aaattgagacaattaattaagttaagggaccggatgattgaataag 156  Q
    ||||| ||||||| ||||||||||||||||  ||||||||||||||    
T  21249633 aaattaagacaatcaattaagttaagggacaagatgattgaataag 21249678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 2e-57; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 10824585 - 10824718
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||    
T  10824585 gagagaaactactagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattgatacaaattatagttaggggaccaaattgagacaatcaa 10824684  T
Q  127 ttaagttaagggaccggatgattgaataagccta 160  Q
    ||||||||||||||||||||||||||||||||||    
T  10824685 ttaagttaagggaccggatgattgaataagccta 10824718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 37189565 - 37189693
Alignment:
Q  28 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 127  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||    
T  37189565 agagaaactaccagaaatgactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagataggggaccaaattgagacaatcaat 37189664  T
Q  128 taagttaagggaccggatgattgaataag 156  Q
    |||||||||||||| | ||||||||||||    
T  37189665 taagttaagggaccaggtgattgaataag 37189693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 27 - 159
Target Start/End: Complemental strand, 22683272 - 22683140
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||    
T  22683272 gagagaaactaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattgatacaaattatagttaggggaccaaattgagacaatcaa 22683173  T
Q  127 ttaagttaagggaccggatgattgaataagcct 159  Q
    ||||||||| ||| ||| |||||||||||||||    
T  22683172 ttaagttaaaggagcgggtgattgaataagcct 22683140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 18844590 - 18844476
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| ||    
T  18844590 gagagaaactaccagaaatgactaaaactagtaacgaagcaaaacataggggaccaaattgatacaaattatagttaggggaccaaattgagataatcaa 18844491  T
Q  127 ttaagttaagggacc 141  Q
    |||||||||||||||    
T  18844490 ttaagttaagggacc 18844476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 19056367 - 19056500
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||  ||||||  ||||||||||||||| ||||||||||||||  |||||||||||||| |||||||||||||||| ||||| | ||||| ||    
T  19056367 gagagaaactgacagaaatgactaaaactagtaacaaagcaaaacataggataccaaattggtacagattatagttaggggaccaaattaaaacaatcaa 19056466  T
Q  127 ttaagttaagggaccggatgattgaataagccta 160  Q
    ||||||||||||||||||||||||||||||||||    
T  19056467 ttaagttaagggaccggatgattgaataagccta 19056500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 40 - 160
Target Start/End: Original strand, 18844677 - 18844798
Alignment:
Q  40 agaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggg-gactaaattgagacaattaattaagttaaggg 138  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||  || ||||||||||||| ||||||||||||||    
T  18844677 agaaagaactaaaactagtaacggagcaaaacatagaggaccaaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaaggg 18844776  T
Q  139 accggatgattgaataagccta 160  Q
    | ||| ||||||||||||||||    
T  18844777 atcgggtgattgaataagccta 18844798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 33 - 158
Target Start/End: Complemental strand, 37189492 - 37189368
Alignment:
Q  33 aactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagt 132  Q
    ||||| ||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||| ||||||||    
T  37189492 aactaacagaaaggactaaaactagtaacggagcaaaacatagaggaccaaattggtacaaattatagttatgagaccaaattgagacaatcaattaagt 37189393  T
Q  133 taagggaccggatgattgaataagcc 158  Q
    ||| ||||||| ||||||||||||||    
T  37189392 taa-ggaccgggtgattgaataagcc 37189368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 27 - 157
Target Start/End: Original strand, 15825737 - 15825865
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    |||||||||||  | |||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||| ||    
T  15825737 gagagaaactaataaaaaggactaaaactaataacaaagcaaaacataggggaccaaattggtacaaattatagtta--ggaccaaattgagacaatcaa 15825834  T
Q  127 ttaagttaagggaccggatgattgaataagc 157  Q
    |||||||||| |||||| |||||||||||||    
T  15825835 ttaagttaagagaccgggtgattgaataagc 15825865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 27 - 158
Target Start/End: Complemental strand, 19056281 - 19056150
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||| ||||||  ||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||| ||||| | ||||| ||    
T  19056281 gagagaaactaacagaaaagactaaaactagtaacaaagcaaaatataggggaccaaattgatacaaattataattaggggaccaaattaatacaatcaa 19056182  T
Q  127 ttaagttaagggaccggatgattgaataagcc 158  Q
    ||||||||||||| | | ||||||||||||||    
T  19056181 ttaagttaagggatcaggtgattgaataagcc 19056150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 10824496 - 10824383
Alignment:
Q  30 agaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaatta 129  Q
    |||||||| ||||||| |||||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||  | ||| |||||    
T  10824496 agaaactaacagaaaggactaaaactagtaacggagcaaaacatagaggaccaaattgatacaaattataattaggggaccaaattgcaataatcaatta 10824397  T
Q  130 agttaagggaccgg 143  Q
    |||||| |||||||    
T  10824396 agttaaaggaccgg 10824383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 22683357 - 22683445
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaatt 115  Q
    |||||||||||  |||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| | ||||||||||| |||||    
T  22683357 gagagaaactaagagaaaggactaaaactagtaacggagcaaaacatagaggaccaaattggtacaaataaaagttaggggaccaaatt 22683445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 22683342 - 22683290
Alignment:
Q  40 agaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  22683342 agaaaggactaaaactagtaacggagcaaaacataggggaccaaattggtaca 22683290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 10824514 - 10824567
Alignment:
Q  39 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    ||||||| ||||||||||| |||| |||||||||||||||| ||||||||||||    
T  10824514 cagaaaggactaaaactaggaacggagcaaaacataggggatcaaattggtaca 10824567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 19056307 - 19056348
Alignment:
Q  51 aaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  19056307 aaactagtaacgaagcaaaacacaggggaccaaattggtaca 19056348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 18844658 - 18844608
Alignment:
Q  42 aaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    |||| ||||||||||| |||| || |||||||||||||| |||||||||||    
T  18844658 aaaggactaaaactaggaacggagtaaaacataggggactaaattggtaca 18844608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 37189496 - 37189541
Alignment:
Q  47 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    ||||||||||| |||| ||||||||| |||||||| ||||||||||    
T  37189496 actaaaactaggaacggagcaaaacacaggggaccgaattggtaca 37189541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 27 - 159
Target Start/End: Complemental strand, 13884620 - 13884488
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||    
T  13884620 gagagaaactaccagaaaagactaaaactagtaacgaagcaaaacatagggggccaaattggtacaaattatagttaggggaccaaattgagacaatcaa 13884521  T
Q  127 ttaagttaagggaccggatgattgaataagcct 159  Q
    ||||||||||||||||| |||||||||||||||    
T  13884520 ttaagttaagggaccgggtgattgaataagcct 13884488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 13884706 - 13884835
Alignment:
Q  29 gagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaatt 128  Q
    ||||||||| || |||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13884706 gagaaactaacaaaaaggactaaaaccagtaacgaagcaaaacatagaggaccaaattggtacaaattatagttaggggactaaattgagacaatcaatt 13884805  T
Q  129 aagttaagggaccggatgattgaataagcc 158  Q
    ||||||||||||||| ||||||||||||||    
T  13884806 aagttaagggaccgggtgattgaataagcc 13884835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 28 - 160
Target Start/End: Complemental strand, 42126512 - 42126380
Alignment:
Q  28 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 127  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| | |  |||||||||||||||||    
T  42126512 agagaaactaccagaaaggactaaaactagtagcgaagcaaaacatagggggccaaattgatacaaattatagttagagaatcaaattgagacaattaat 42126413  T
Q  128 taagttaagggaccggatgattgaataagccta 160  Q
    |||||||||||||||| ||||||||||||||||    
T  42126412 taagttaagggaccgggtgattgaataagccta 42126380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 27 - 159
Target Start/End: Complemental strand, 29714673 - 29714541
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||| ||||||  | |||| |||||||| |||||||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||||| ||    
T  29714673 gagagaaactaacagaaatgattaaagctagtaacaaagcaaaatataggggaccaaattggtacaaactatagtttggggaccaaattgagacaatcaa 29714574  T
Q  127 ttaagttaagggaccggatgattgaataagcct 159  Q
    ||||||||||||||||| |||||||||||||||    
T  29714573 ttaagttaagggaccgggtgattgaataagcct 29714541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 2554066 - 2554179
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||| |||||||||||||||| |||||| |||||||||||||| ||||||||||| |||||||||||||||||||  ||||||||||||| ||    
T  2554066 gagagaaactaacagaaagaactaaaacaagtaacaaagcaaaacataggagaccaaattggaacaaattatagttaggggatcaaattgagacaatcaa 2554165  T
Q  127 ttaagttaagggac 140  Q
    ||||||||||||||    
T  2554166 ttaagttaagggac 2554179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 42126601 - 42126731
Alignment:
Q  28 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 127  Q
    |||||||||| ||||||  ||||||| |||| ||  |||||||| ||| ||||||||||||||||||||||||||||||||  ||||||||| ||| |||    
T  42126601 agagaaactaacagaaatgactaaaattagtgacagagcaaaacttagaggaccaaattggtacaaattatagttaggggatcaaattgagataatcaat 42126700  T
Q  128 taagttaagggaccggatgattgaataagcc 158  Q
    |||||||||||||||| ||||||||||||||    
T  42126701 taagttaagggaccgggtgattgaataagcc 42126731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 11867898 - 11868030
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||| || |||| |||||||||||| || || |||||||||| ||||||||||| ||||||||||||||| || || ||||||||||||| ||    
T  11867898 gagagaaactaacataaaggactaaaactagtgacaaatcaaaacatagaggaccaaattgatacaaattatagttaaggaaccaaattgagacaatcaa 11867997  T
Q  127 ttaagttaagggaccggatgattgaataagccta 160  Q
    ||||||||| ||||| | ||||||||||||||||    
T  11867998 ttaagttaa-ggaccaggtgattgaataagccta 11868030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 47 - 158
Target Start/End: Original strand, 29714778 - 29714889
Alignment:
Q  47 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatg 146  Q
    |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||| | ||||| ||||||||||||||||| | ||    
T  29714778 actaaaactagtaatgaagcaaaacatagaggaccaaattgatacaaattatagttaagggaccaaattaaaacaatcaattaagttaagggaccaggtg 29714877  T
Q  147 attgaataagcc 158  Q
    ||  ||||||||    
T  29714878 atcaaataagcc 29714889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 43416360 - 43416262
Alignment:
Q  61 cgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcct 159  Q
    |||| ||||||||||| ||  |||||| |||||||||||||||||||| |||||| ||||||| |||||||||||| ||||| ||||||||||||||||    
T  43416360 cgaaacaaaacataggagattaaattgatacaaattatagttaggggattaaattaagacaatcaattaagttaagagaccgaatgattgaataagcct 43416262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 14996678 - 14996758
Alignment:
Q  30 agaaactaccagaaagaactaaaactagtaacgaagcaaaacata-ggggaccaaattggtacaaattatagttaggggac 109  Q
    |||||||| ||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  14996678 agaaactaacagaaaggactaaaactagtaacaaagcaaaacatagggggatcaaattggtacaaattataattaggggac 14996758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 2554052 - 2554002
Alignment:
Q  39 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggt 89  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  2554052 cagaaaggactaaaactagtaacgaagtaaaacataggggaccaaattggt 2554002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 14996653 - 14996608
Alignment:
Q  47 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  14996653 actaaaactagtaacgaagcaaaacataggggaccaaattagtaca 14996608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 15862540 - 15862632
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgaga 119  Q
    |||||||||||   ||||| | |||||| ||||||| |||||| ||||| ||||||||||  ||||||||||||||||||||  |||||||||    
T  15862540 gagagaaactaatggaaagtattaaaaccagtaacggagcaaatcatagaggaccaaattaatacaaattatagttaggggatcaaattgaga 15862632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 29714744 - 29714691
Alignment:
Q  39 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    ||||||| |||||||||||||||| || |||||||||| |||||||||||||||    
T  29714744 cagaaaggactaaaactagtaacggagtaaaacataggagaccaaattggtaca 29714691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 26745959 - 26746067
Alignment:
Q  32 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 131  Q
    |||||| ||||||| ||  ||||| |||| | |||||||| ||| |||| || ||||||||||||||| ||||||||| || |||| ||||  || ||||    
T  26745959 aaactaacagaaaggaccgaaactggtaatggagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttgatacaaacaaataag 26746058  T
Q  132 ttaagggac 140  Q
    |||||||||    
T  26746059 ttaagggac 26746067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 26745389 - 26745281
Alignment:
Q  32 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 131  Q
    |||||| ||||||| ||  ||||| |||||  |||||||| ||| |||| || ||||||||||||||| ||||||||| || ||   ||||  |||||||    
T  26745389 aaactaacagaaaggaccgaaactggtaacagagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttagtacaaacaattaag 26745290  T
Q  132 ttaagggac 140  Q
    |||||||||    
T  26745289 ttaagggac 26745281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 42126577 - 42126532
Alignment:
Q  47 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    ||||||||||  |||| |||||||||||||||||||||||| ||||    
T  42126577 actaaaactaagaacggagcaaaacataggggaccaaattgataca 42126532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 27 - 158
Target Start/End: Complemental strand, 16973195 - 16973064
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| ||    
T  16973195 gagagaaactaacagaaagaattaaaactagtaacgaagcaaaacataggggaccaaattggtacaaactatagttaggggaccaaattaagacaatcaa 16973096  T
Q  127 ttaagttaagggaccggatgattgaataagcc 158  Q
    ||||||||||||||||| ||||||||||||||    
T  16973095 ttaagttaagggaccgggtgattgaataagcc 16973064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 27 - 159
Target Start/End: Complemental strand, 2916509 - 2916377
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||| ||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||    
T  2916509 gagagaaactaacagaaaggattaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagacaatcaa 2916410  T
Q  127 ttaagttaagggaccggatgattgaataagcct 159  Q
    |||||||||| || ||| |||||||||||||||    
T  2916409 ttaagttaagagatcgggtgattgaataagcct 2916377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 44594454 - 44594583
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||| ||||||||||||| ||    
T  44594454 gagagaaactaccagaaatgactaaaactagtaacgaagcaaaacataatggaccaaattgatacaaattatagttaggggaccaaattgagacaatcaa 44594553  T
Q  127 ttaagttaagggaccggatgattgaataag 156  Q
    |||| |||| ||||||| ||||||||||||    
T  44594554 ttaaattaaaggaccgggtgattgaataag 44594583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 44594367 - 44594246
Alignment:
Q  40 agaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggg-gactaaattgagacaattaattaagttaaggg 138  Q
    ||||||||||||||||||||||  |||||||||||| ||||||||||| ||||||||||||||||||  || ||||||||||||| ||||||||||||||    
T  44594367 agaaagaactaaaactagtaacagagcaaaacatagaggaccaaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaaggg 44594268  T
Q  139 accggatgattgaataagccta 160  Q
    ||||| ||||||||||||||||    
T  44594267 accgggtgattgaataagccta 44594246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 40987787 - 40987656
Alignment:
Q  28 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 127  Q
    |||||||||| || |||  ||||||||||||||| || ||||||||| | ||| ||||||||||||||||||||||||| || ||||||||||||| |||    
T  40987787 agagaaactaacataaaagactaaaactagtaacaaatcaaaacatatgagactaaattggtacaaattatagttagggaaccaaattgagacaatcaat 40987688  T
Q  128 taagttaagggaccggatgattgaataagcct 159  Q
    |||||||||||||||||||||| |||||||||    
T  40987687 taagttaagggaccggatgattaaataagcct 40987656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 38982773 - 38982886
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||||||||||  |||||||||||||| ||||||||||||| || ||||||||| ||||||||||||||| ||||| ||||||||||||| ||    
T  38982773 gagagaaactaccagaaatgactaaaactagtaatgaagcaaaacataaggaaccaaattgatacaaattatagttaagggaccaaattgagacaatcaa 38982872  T
Q  127 ttaagttaagggac 140  Q
    ||||||||||||||    
T  38982873 ttaagttaagggac 38982886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 27 - 159
Target Start/End: Original strand, 16973280 - 16973412
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||  ||||||  |||||||||||||| | |||||||||||| |||||||||||  |||||||||||||||||||| ||||||||||||| ||    
T  16973280 gagagaaactgacagaaatgactaaaactagtaatggagcaaaacatagaggaccaaattgacacaaattatagttaggggaccaaattgagacaatcaa 16973379  T
Q  127 ttaagttaagggaccggatgattgaataagcct 159  Q
    |||||||||||||||   |||||||||||||||    
T  16973380 ttaagttaagggaccatgtgattgaataagcct 16973412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 11533680 - 11533794
Alignment:
Q  47 actaaaactagtaacgaagcaaaacatagggg-accaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggat 145  Q
    ||||||||||||||  |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||| |||| |||    
T  11533680 actaaaactagtaataaagcaaaacatagggggaccaaattggtacaaattatagttgggggaccaaattgagacaatcacttaagttaagagacctgat 11533779  T
Q  146 gattgaataagccta 160  Q
    |||||||||||||||    
T  11533780 gattgaataagccta 11533794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 28 - 167
Target Start/End: Original strand, 13559519 - 13559657
Alignment:
Q  28 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 127  Q
    |||||||||| || |||  |||||| ||||||||  |||||| || | |||||||| ||| |||||||||||||||||| || ||||||| ||||| |||    
T  13559519 agagaaactaacataaatgactaaatctagtaacagagcaaagcacaagggaccaa-ttgatacaaattatagttagggaaccaaattgaaacaatcaat 13559617  T
Q  128 taagttaagggaccggatgattgaataagcctacttttta 167  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  13559618 taagttaagggaccggatgattgaataagcctatttttta 13559657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 27 - 158
Target Start/End: Complemental strand, 38982688 - 38982557
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||| |||||  |||||| ||||||||||| ||||||||||||||||   |||||||||||||||||||||||||||||  | ||||||||||||| ||    
T  38982688 gagagtaactaatagaaaggactaaaactagcaacgaagcaaaacataaatgaccaaattggtacaaattatagttagggagccaaattgagacaatcaa 38982589  T
Q  127 ttaagttaagggaccggatgattgaataagcc 158  Q
    ||||||||| ||| ||| ||||||| ||||||    
T  38982588 ttaagttaaaggatcgggtgattgattaagcc 38982557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 2916593 - 2916721
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||| ||||||| || ||||||||||||  ||||||| |||| ||| ||| ||||||||||| ||||||||||||| ||||||||||||| ||    
T  2916593 gagagaaactaacagaaaggaccaaaactagtaacagagcaaaatatagaggatcaagttggtacaaataatagttaggggaccaaattgagacaatcaa 2916692  T
Q  127 ttaagttaagggaccggatgattgaataa 155  Q
    ||||||||||| |   |||||||||||||    
T  2916693 ttaagttaaggaattagatgattgaataa 2916721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 24125876 - 24125975
Alignment:
Q  28 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 127  Q
    |||||||||| |||||||||||||||||||      ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| |||||||    
T  24125876 agagaaactaacagaaagaactaaaactag------agcaaaacataagggaccaaattggtacaaattatagttaggagaccaaattgagaaaattaat 24125969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 40987836 - 40987987
Alignment:
Q  1 attgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatag 100  Q
    ||||||||||||||||||        ||||||||||| ||||||  ||||||| ||| ||   ||||||| |||||||||||||||  ||||||||||||    
T  40987836 attgatacataagttaacggttttttgagagaaactaacagaaatgactaaaattagcaatagagcaaaatataggggaccaaattaatacaaattatag 40987935  T
Q  101 ttaggggactaaattgagacaattaattaagttaagggaccggatgattgaa 152  Q
    |||| |||  |||||||||||||||||||||||||| |||||| ||||||||    
T  40987936 ttagaggatcaaattgagacaattaattaagttaagagaccgggtgattgaa 40987987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 24126146 - 24126245
Alignment:
Q  28 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 127  Q
    |||||||||| || |||| |||||||||||      ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||| |||    
T  24126146 agagaaactaacataaaggactaaaactag------agcaaaacataagggaccaaattggtacaaattatagttaggagaccaaattgagaaaatcaat 24126239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 24125737 - 24125670
Alignment:
Q  91 caaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcc 158  Q
    ||||||||||||||||||  ||||||||||||| ||||||||||||||||||| ||| ||||||||||    
T  24125737 caaattatagttaggggatcaaattgagacaatcaattaagttaagggaccggttgagtgaataagcc 24125670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 16973266 - 16973213
Alignment:
Q  39 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  16973266 cagaaaggactaaaactagtaacggagcaaaacataggggaccaaattggtaca 16973213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 44594383 - 44594436
Alignment:
Q  39 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    ||||||| ||||||||||| |||| ||||||||||||||||| |||||||||||    
T  44594383 cagaaaggactaaaactaggaacggagcaaaacataggggactaaattggtaca 44594436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 13559434 - 13559357
Alignment:
Q  28 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagg 105  Q
    |||||||||| ||||||  |||||||||| |||| || ||||| ||| | ||||||||||  ||||||||||||||||    
T  13559434 agagaaactaacagaaatgactaaaactaataacaaaacaaaatatatgagaccaaattgaaacaaattatagttagg 13559357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 38982702 - 38982755
Alignment:
Q  39 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    ||||||| |||||||| || |||| ||||||||||| |||||||||||||||||    
T  38982702 cagaaaggactaaaaccaggaacggagcaaaacataagggaccaaattggtaca 38982755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 2916571 - 2916526
Alignment:
Q  47 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    |||||||||| ||||| |||||||  ||||||||||||||||||||    
T  2916571 actaaaactaataacggagcaaaatgtaggggaccaaattggtaca 2916526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 24125812 - 24125857
Alignment:
Q  47 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    |||||||||| ||||  |||||||||||||||||||||||| ||||    
T  24125812 actaaaactaataacagagcaaaacataggggaccaaattgataca 24125857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 27 - 159
Target Start/End: Original strand, 22921 - 23053
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||||| ||    
T  22921 gagagaaactaacagaaaggactaaaactagtaacggagcaaaacatagaggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaa 23020  T
Q  127 ttaagttaagggaccggatgattgaataagcct 159  Q
    ||||||||||||||||| |||||||||||||||    
T  23021 ttaagttaagggaccgggtgattgaataagcct 23053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 28 - 160
Target Start/End: Complemental strand, 28715772 - 28715640
Alignment:
Q  28 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 127  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  || ||||| | |||||||||    
T  28715772 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattgatacaaattatagttaggaaaccaaattaaaacaattaat 28715673  T
Q  128 taagttaagggaccggatgattgaataagccta 160  Q
    |||||||||||||||| ||||||||||| ||||    
T  28715672 taagttaagggaccgggtgattgaataaaccta 28715640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 47 - 160
Target Start/End: Complemental strand, 30862329 - 30862216
Alignment:
Q  47 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatg 146  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||    
T  30862329 actaaaactagtaacaaagcaaaatataggggaccaaattggtacaaattatagttaggggaccaaattcagacaatcaattaagttaagggaccgaatg 30862230  T
Q  147 attgaataagccta 160  Q
    ||||||||||||||    
T  30862229 attgaataagccta 30862216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 28715858 - 28715991
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||| ||||||  |||||||||||| ||  |||||||| ||| ||||||||||||||||||||||||||||||||| ||||| ||||||| ||    
T  28715858 gagagaaactaacagaaatgactaaaactagtgactgagcaaaacttagaggaccaaattggtacaaattatagttaggggaccaaattaagacaatcaa 28715957  T
Q  127 ttaagttaagggaccggatgattgaataagccta 160  Q
    ||||||||||||||||| | ||||||||||||||    
T  28715958 ttaagttaagggaccgggtaattgaataagccta 28715991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 27 - 159
Target Start/End: Complemental strand, 41986041 - 41985909
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||| | ||||| ||||||| ||||||| |||||||||||| ||||||||||||  |||||||||||||||||||  ||||||||||||| ||    
T  41986041 gagagaaactaacggaaaggactaaaattagtaacaaagcaaaacatatgggaccaaattgaaacaaattatagttaggggatcaaattgagacaatcaa 41985942  T
Q  127 ttaagttaagggaccggatgattgaataagcct 159  Q
    |||||||||||||| || |||||||||||||||    
T  41985941 ttaagttaagggactgggtgattgaataagcct 41985909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 27 - 167
Target Start/End: Complemental strand, 6474412 - 6474271
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaa-cataggggaccaaattggtacaaattatagttaggggactaaattgagacaatta 125  Q
    ||||||||||| ||||||  ||||||||||||||| |||||||| ||||||||||||||||| || |||||||||||||||||  ||||||||||||| |    
T  6474412 gagagaaactaacagaaaagactaaaactagtaacaaagcaaaaacataggggaccaaattgatataaattatagttaggggatcaaattgagacaatca 6474313  T
Q  126 attaagttaagggaccggatgattgaataagcctacttttta 167  Q
    |||||||||||||| | | | ||||||||||| || ||||||    
T  6474312 attaagttaagggatccggtaattgaataagcataattttta 6474271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 6474497 - 6474629
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||| || |||| |||||||||||||||  |||||| |||| |||| ||||| ||||||| ||||||||||| ||| ||||| ||||||| ||    
T  6474497 gagagaaactaacataaaggactaaaactagtaacagagcaaagcataagggagcaaatcggtacaa-ttatagttaggagaccaaattaagacaatcaa 6474595  T
Q  127 ttaagttaagggaccggatgattgaataagccta 160  Q
    ||||||||||||| ||| ||||||||||||||||    
T  6474596 ttaagttaagggatcgggtgattgaataagccta 6474629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 47373679 - 47373792
Alignment:
Q  28 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 127  Q
    |||||||||| || |||| | |||||||||||||  | ||||||||| | ||| |||||||||||||||||| ||||||||| ||||||||||||| |||    
T  47373679 agagaaactaacataaaggattaaaactagtaacacatcaaaacatatgagactaaattggtacaaattataattaggggaccaaattgagacaatcaat 47373778  T
Q  128 taagttaagggacc 141  Q
    ||||||||||||||    
T  47373779 taagttaagggacc 47373792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 30862436 - 30862564
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||| ||||||  ||||||| |||||||  ||||||||||| |||||||||||| |||||||||||||||||| || ||||||| ||||| ||    
T  30862436 gagagaaactaacagaaaagactaaaattagtaacagagcaaaacataagggaccaaattgatacaaattatagttagggaacaaaattgaaacaatcaa 30862535  T
Q  127 ttaagttaagggaccggatgattgaataa 155  Q
    || | ||||||||||   |||||||||||    
T  30862536 ttcaattaagggaccaattgattgaataa 30862564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 27 - 158
Target Start/End: Complemental strand, 47373595 - 47373462
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaat--tatagttaggggactaaattgagacaatt 124  Q
    ||||||||||| || |||  ||||||||||| |||  ||||||||||||||||||||||||||||||||  |||| |||| |||  |||||||||||||     
T  47373595 gagagaaactaacataaatgactaaaactagcaacagagcaaaacataggggaccaaattggtacaaattatataattagaggatcaaattgagacaatc 47373496  T
Q  125 aattaagttaagggaccggatgattgaataagcc 158  Q
    |||||||||||| || ||  ||||||||||||||    
T  47373495 aattaagttaagagatcgagtgattgaataagcc 47373462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 86 - 159
Target Start/End: Original strand, 41986183 - 41986256
Alignment:
Q  86 tggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcct 159  Q
    |||||||||||||||||||||||  ||||||||||||  ||||||||||||| ||||| |||||||||||||||    
T  41986183 tggtacaaattatagttaggggatcaaattgagacaaacaattaagttaaggaaccgggtgattgaataagcct 41986256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 38408121 - 38408229
Alignment:
Q  32 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 131  Q
    |||||| ||||||| ||  ||||| |||||  |||||||| ||| |||| || ||||||||||||||| ||||||||| || |||| ||||  |||||||    
T  38408121 aaactaacagaaaggaccgaaactggtaacagagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttgatacaaacaattaag 38408220  T
Q  132 ttaagggac 140  Q
    |||||||||    
T  38408221 ttaagggac 38408229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 6271188 - 6271296
Alignment:
Q  32 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 131  Q
    |||||| ||||||| ||  |||||||||||| |||||||| ||  |||| || ||||||||||||||| ||||||||| || |||  | ||  |||||||    
T  6271188 aaactaacagaaaggaccgaaactagtaacggagcaaaacttaaaggacgaatttggtacaaattatatttaggggaccaatttggtagaaacaattaag 6271287  T
Q  132 ttaagggac 140  Q
    |||||||||    
T  6271288 ttaagggac 6271296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 41986058 - 41986108
Alignment:
Q  42 aaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    |||| ||||||| ||| |||| |||||||||||||||||||||||||||||    
T  41986058 aaaggactaaaattagcaacggagcaaaacataggggaccaaattggtaca 41986108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 6270326 - 6270237
Alignment:
Q  51 aaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggac 140  Q
    |||||||||||| ||||| || ||| |||| || ||||||||||||||| ||||| ||| || ||   |||| |||||||||||||||||    
T  6270326 aaactagtaacggagcaacacttagaggacgaatttggtacaaattatatttaggcgaccaatttagtacaaataattaagttaagggac 6270237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 47373657 - 47373612
Alignment:
Q  47 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    |||||||||| ||||| ||||||||||||||||| |||||||||||    
T  47373657 actaaaactaataacggagcaaaacataggggactaaattggtaca 47373612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 22226665 - 22226721
Alignment:
Q  104 ggggactaaattgagacaattaattaagttaagggaccggatgattgaataagccta 160  Q
    |||||| ||||||||||||| ||||||| ||||||| | | ||||||||||||||||    
T  22226665 ggggaccaaattgagacaatcaattaagctaagggatcaggtgattgaataagccta 22226721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 38407558 - 38407450
Alignment:
Q  32 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 131  Q
    |||||| ||||||| ||  ||||| |||||  |||||||| ||| |||| || ||||||||||||||| ||||||||| || |||  ||||   ||||||    
T  38407558 aaactaacagaaaggaccgaaactggtaacagagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttggtacaaaccattaag 38407459  T
Q  132 ttaagggac 140  Q
    |||||||||    
T  38407458 ttaagggac 38407450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 27 - 159
Target Start/End: Original strand, 51663466 - 51663598
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||| ||||||  |||||||||||||||  |||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| ||    
T  51663466 gagagaaactaacagaaatgactaaaactagtaacatagcaaaacatagaggaccaaattgctacaaattatagttaggggaccaaattgagacaatcaa 51663565  T
Q  127 ttaagttaagggaccggatgattgaataagcct 159  Q
    |||||||||||||||||||||||||||||||||    
T  51663566 ttaagttaagggaccggatgattgaataagcct 51663598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 40244756 - 40244624
Alignment:
Q  28 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacatagggga-ccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    |||||||||| ||||||  ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| ||    
T  40244756 agagaaactaacagaaatgactaaaactagtaacaaagcaaaacataggggaaccaaattggtacaaattatagttaagggaccaaattgagacaatcaa 40244657  T
Q  127 ttaagttaagggaccggatgattgaataagcct 159  Q
    ||||||||||||| |||||||||||||||||||    
T  40244656 ttaagttaagggatcggatgattgaataagcct 40244624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 46003465 - 46003593
Alignment:
Q  28 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 127  Q
    |||||||||||||||||| |||||||||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||| ||||||||||||| |||    
T  46003465 agagaaactaccagaaaggactaaaactagtaatgaagcaaaacaaaggggatcaaattggtacaaattttagttaggggaccaaattgagacaatcaat 46003564  T
Q  128 taagttaagggaccggatgattgaataag 156  Q
    |||||||||||||| ||||||| ||||||    
T  46003565 taagttaagggaccagatgattaaataag 46003593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 27 - 158
Target Start/End: Complemental strand, 51663381 - 51663250
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| | ||| | ||||| ||    
T  51663381 gagagaaactaccagaaatgactaaaactagtaacgaagcaaaacataggggactaaattgatacaaattatagttagtggaccatattaaaacaatcaa 51663282  T
Q  127 ttaagttaagggaccggatgattgaataagcc 158  Q
    |||||||||| |||||| ||||| ||||||||    
T  51663281 ttaagttaagagaccgggtgattaaataagcc 51663250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 20538056 - 20537925
Alignment:
Q  28 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 127  Q
    ||||||||||  |||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| |  || |||    
T  20538056 agagaaactaatagaaaggactaaaactagtaatgaagcaaaacataggggaccaaattggaacaaattatagttaggggatcaaattgataatatcaat 20537957  T
Q  128 taagttaagggaccggatgattgaataagcct 159  Q
    |||||||||||||| ||||||| |||| ||||    
T  20537956 taagttaagggaccagatgattcaataggcct 20537925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 27 - 157
Target Start/End: Original strand, 20538150 - 20538280
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||| ||||||  |||||||||||||||| ||||||||||||   || |||||| ||||||||||||||||||||  ||||||||||||| ||    
T  20538150 gagagaaactaacagaaatgactaaaactagtaacggagcaaaacatagataactaaattgatacaaattatagttaggggatcaaattgagacaatcaa 20538249  T
Q  127 ttaagttaagggaccggatgattgaataagc 157  Q
    |||| |||| ||||||| |||||||||||||    
T  20538250 ttaaattaaaggaccgggtgattgaataagc 20538280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 46003379 - 46003241
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||| || |||| ||||||||| |||||  | || ||||||| ||||||||||| ||||||||||||||||||||| ||||| | ||||| ||    
T  46003379 gagagaaactaacaaaaaggactaaaacttgtaacagaacagaacatagaggaccaaattgatacaaattatagttaggggaccaaattaaaacaatcaa 46003280  T
Q  127 ttaagttaagggaccggatgattgaataagcctactttt 165  Q
    ||||||||| ||||||| ||||||||||| |||||||||    
T  46003279 ttaagttaaaggaccgggtgattgaataaacctactttt 46003241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 40364194 - 40364301
Alignment:
Q  47 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatg 146  Q
    |||||||||||||||| | |||||||||||| | ||||||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||||   ||    
T  40364194 actaaaactagtaacggaacaaaacataggg-atcaaattggtacaaattatagttaggagaccaaattgaaacaatcaattaagttaagggaccaagtg 40364292  T
Q  147 attgaataa 155  Q
    |||||||||    
T  40364293 attgaataa 40364301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 27 - 159
Target Start/End: Complemental strand, 40364172 - 40364040
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||| || |||  |||||||||| ||||| ||||||| | |||||| ||||||| ||||||||||| ||| ||||| ||||| ||| ||| ||    
T  40364172 gagagaaactaacaaaaatgactaaaactaataacggagcaaaatacaggggatcaaattgatacaaattataattatgggaccaaattaagataatcaa 40364073  T
Q  127 ttaagttaagggaccggatgattgaataagcct 159  Q
    |||||||||||||  || |||| ||||||||||    
T  40364072 ttaagttaagggattgggtgatcgaataagcct 40364040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 40244873 - 40244936
Alignment:
Q  96 tatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcct 159  Q
    |||||||||||||| ||||||||||||| |||||||||||||||| || |||||||||||||||    
T  40244873 tatagttaggggaccaaattgagacaatcaattaagttaagggacggggtgattgaataagcct 40244936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 46003393 - 46003446
Alignment:
Q  39 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  46003393 cagaaaggactaaaactagtaacgaagcaaaacatagaggaccaaattggtaca 46003446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 20538121 - 20538076
Alignment:
Q  47 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||    
T  20538121 actaaaactaataacaaagcaaaacataggggaccaaattggtaca 20538076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 51663444 - 51663399
Alignment:
Q  47 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    ||||||||||| |||  ||||||||||||||||||||||| |||||    
T  51663444 actaaaactaggaacagagcaaaacataggggaccaaattagtaca 51663399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 48867469 - 48867537
Alignment:
Q  76 gggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccgga 144  Q
    ||||||||||||  |||  | ||||||| ||||| ||||||||| ||| || |||||||||||||||||    
T  48867469 gggaccaaattgacacacttaatagttaagggaccaaattgagaaaataaaataagttaagggaccgga 48867537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 47 - 158
Target Start/End: Original strand, 5271 - 5382
Alignment:
Q  47 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatg 146  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  5271 actaaaactaataacaaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatg 5370  T
Q  147 attgaataagcc 158  Q
    ||||||||||||    
T  5371 attgaataagcc 5382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 8e-47; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 47 - 158
Target Start/End: Original strand, 2216814 - 2216925
Alignment:
Q  47 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatg 146  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  2216814 actaaaactaataacaaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatg 2216913  T
Q  147 attgaataagcc 158  Q
    ||||||||||||    
T  2216914 attgaataagcc 2216925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 27 - 159
Target Start/End: Complemental strand, 24798756 - 24798624
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||| ||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||  ||    
T  24798756 gagagaaactaacagaaatgactaaaactagtaacgaagcaaaacatagaggaccaaattggtacaaattatagtcaggggaccaaattgaaacaaccaa 24798657  T
Q  127 ttaagttaagggaccggatgattgaataagcct 159  Q
    |||||||||||||||| || |||||||||||||    
T  24798656 ttaagttaagggaccgaataattgaataagcct 24798624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 32 - 160
Target Start/End: Original strand, 24798843 - 24798971
Alignment:
Q  32 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 131  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||| ||||||| ||||||     
T  24798843 aaactactagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattgatacaaattatagttaggggatcaaattaagacaatcaattaat 24798942  T
Q  132 ttaagggaccggatgattgaataagccta 160  Q
    |||||||| ||| ||||||||||||||||    
T  24798943 ttaagggatcgggtgattgaataagccta 24798971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 11643879 - 11643754
Alignment:
Q  28 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 127  Q
    |||||||||| |||| || ||||||||||||||| || |||||||||||| ||||||||| ||||||||||||||||||||  ||||||||||||| |||    
T  11643879 agagaaactaacagagaggactaaaactagtaacaaaacaaaacatagggaaccaaattgatacaaattatagttaggggatcaaattgagacaatcaat 11643780  T
Q  128 taagttaagggaccggatgattgaat 153  Q
    ||| |||||||||||| |||||||||    
T  11643779 taaattaagggaccgggtgattgaat 11643754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 24690449 - 24690353
Alignment:
Q  64 agcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagccta 160  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| |||||| ||||||||||||||||    
T  24690449 agcaaaacatagaggaccaaattggtacaaattatagtaaggggaccaaattgagacaatcaattaagttaagagaccgggtgattgaataagccta 24690353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 11643985 - 11644097
Alignment:
Q  47 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggg-actaaattgagacaattaattaagttaagggaccggat 145  Q
    ||||||||||||||| ||| ||||||||||| ||||||||| ||||||||||||||||||| || ||||||||||||| ||||||||||||||||||| |    
T  11643985 actaaaactagtaacaaag-aaaacataggg-accaaattgatacaaattatagttagggggaccaaattgagacaatcaattaagttaagggaccgggt 11644082  T
Q  146 gattgaataagccta 160  Q
    |||||||||||||||    
T  11644083 gattgaataagccta 11644097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 18494949 - 18495079
Alignment:
Q  28 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 127  Q
    |||||||||| |||||||||||||||||| ||||| | ||||| |||||||||||||||| ||||||||||||||| ||||  ||||| | | ||| |||    
T  18494949 agagaaactaacagaaagaactaaaactaataacggatcaaaatataggggaccaaattgatacaaattatagttaagggatcaaattaatataatcaat 18495048  T
Q  128 taagttaagggaccggatgattgaataagcc 158  Q
    |||||||||||||  ||||||||||||||||    
T  18495049 taagttaagggactagatgattgaataagcc 18495079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 28 - 160
Target Start/End: Complemental strand, 18494862 - 18494732
Alignment:
Q  28 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 127  Q
    |||||||||| || |||| ||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| ||||| || ||||||||||||| |||    
T  18494862 agagaaactaacaaaaaggactaaaactagtaacaaagcaaa-cataggggaccaaaatggtacaaattatagctaggg-accaaattgagacaatcaat 18494765  T
Q  128 taagttaagggaccggatgattgaataagccta 160  Q
     |||||||||||||   ||||||||||||||||    
T  18494764 aaagttaagggaccatgtgattgaataagccta 18494732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 24690607 - 24690691
Alignment:
Q  72 ataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataag 156  Q
    ||||||||||||||||||||||||||||||||||| || ||||| | ||||| ||||||||||||||| ||| ||||||||||||    
T  24690607 ataggggaccaaattggtacaaattatagttagggaaccaaattaaaacaatcaattaagttaagggatcgggtgattgaataag 24690691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 11643943 - 11643898
Alignment:
Q  47 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  11643943 actaaaactagtaacggagcaaaacataggggaccaaattggtaca 11643898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 9954914 - 9954825
Alignment:
Q  51 aaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggac 140  Q
    ||||| |||||| |||||||| ||| |||| || ||||||||||||||| ||||||||| || |||  ||||  ||||||||||||||||    
T  9954914 aaactggtaacggagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttggtacaaacaattaagttaagggac 9954825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 9955590 - 9955698
Alignment:
Q  32 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 131  Q
    |||||| ||||||| ||  ||||| |||||  |||||||| ||| |||  || ||||||||||||||| ||||||||| || |||| ||||  |||||||    
T  9955590 aaactaacagaaaggaccgaaactggtaacagagcaaaacttagaggatgaatttggtacaaattatatttaggggaccaatttgatacaaacaattaag 9955689  T
Q  132 ttaagggac 140  Q
    |||||||||    
T  9955690 ttaagggac 9955698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 24798770 - 24798822
Alignment:
Q  41 gaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaa 93  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||| |||||    
T  24798770 gaaaggactaaaactaggaacggagcaaaacataggggaccaaattgatacaa 24798822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 18494878 - 18494931
Alignment:
Q  39 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    ||||||||||||||||||||||   ||| ||| |||||||||||||||| ||||    
T  18494878 cagaaagaactaaaactagtaatagagcgaaatataggggaccaaattgctaca 18494931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 24690504 - 24690557
Alignment:
Q  39 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    ||||||| |||||||||| |||   ||||||||||||| |||||||||||||||    
T  24690504 cagaaaggactaaaactattaatagagcaaaacataggagaccaaattggtaca 24690557  T

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Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 39161419 - 39161286
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | ||    
T  39161419 gagagaaactttcagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattaagacattcaa 39161320  T
Q  127 ttaagttaagggaccggatgattgaataagccta 160  Q
    ||||||||| ||| ||| ||||||||||||||||    
T  39161319 ttaagttaaaggatcgggtgattgaataagccta 39161286  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 27 - 171
Target Start/End: Original strand, 39161503 - 39161647
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||| ||||||| |||||||||| ||||| |||||||||||| |||| |||||||||||||||||||||||||||| ||||| | ||||| ||    
T  39161503 gagagaaactaacagaaaggactaaaactaataacggagcaaaacatagaggactaaattggtacaaattatagttaggggaccaaattaaaacaatcaa 39161602  T
Q  127 ttaagttaagggaccggatgattgaataagcctactttttataat 171  Q
    ||||||||||| |||||||| |||||||||||||  |||||||||    
T  39161603 ttaagttaaggaaccggatggttgaataagcctagattttataat 39161647  T

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Target: chr4; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 27 - 166
Target Start/End: Original strand, 55173469 - 55173608
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||| || |||  |||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| ||  ||||||||||||| ||    
T  55173469 gagagaaactagcaaaaaagactaaaacaagtaacaaagcaaagcataggggaccaaattggtacaaattatagttaggagatcaaattgagacaatcaa 55173568  T
Q  127 ttaagttaagggaccggatgattgaataagcctacttttt 166  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  55173569 ttaagttaagggaccgggtgattgaataagcctaattttt 55173608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 47 - 159
Target Start/End: Original strand, 50509364 - 50509476
Alignment:
Q  47 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatg 146  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| | ||||    
T  50509364 actaaaattagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggatcagatg 50509463  T
Q  147 attgaataagcct 159  Q
    |||||||||||||    
T  50509464 attgaataagcct 50509476  T

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Target: chr4; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 47097016 - 47097146
Alignment:
Q  27 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 126  Q
    ||||||||||| || |||  ||||||||||||||||  |||||||||||   | |||||||||||||||||||||||| |||||||||||||||||| ||    
T  47097016 gagagaaactaacaaaaatgactaaaactagtaacggggcaaaacatag---atcaaattggtacaaattatagttagaggactaaattgagacaatcaa 47097112  T
Q  127 ttaagttaagggaccggatgattgaataagccta 160  Q
    |||||||||| || ||||||||||||||||||||    
T  47097113 ttaagttaagagatcggatgattgaataagccta 47097146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 55173454 - 55173334
Alignment:
Q  39 cagaaagaactaaaactagtaacgaagcaaaacatagggg-accaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagg 137  Q
    ||||||| |||||||||||||||| ||||||| ||||||| ||||||||  ||||||||||||||||||||| ||||| ||||||| |||||||||||||    
T  55173454 cagaaaggactaaaactagtaacggagcaaaatatagggggaccaaattaatacaaattatagttaggggaccaaattaagacaatcaattaagttaagg 55173355  T
Q  138 gaccggatgattgaataagcc 158  Q
     |||||||||| |||||||||    
T  55173354 aaccggatgatcgaataagcc 55173334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 28 - 160
Target Start/End: Complemental strand, 47096928 - 47096798
Alignment:
Q  28 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 127  Q
    |||||||| | || |||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||| |||||||||| ||||||||| ||| |||    
T  47096928 agagaaacaaacataaaggactaaaacaagtaacgaagcaaaacatagggggc-aaattggtacaaattat-gttaggggaccaaattgagataatcaat 47096831  T
Q  128 taagttaagggaccggatgattgaataagccta 160  Q
    |||||||||||| | | ||||||||||||||||    
T  47096830 taagttaagggatcaggtgattgaataagccta 47096798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 47 - 155
Target Start/End: Complemental strand, 37996176 - 37996068
Alignment:
Q  47 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatg 146  Q
    |||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| ||||| | || | |||||||| | | ||    
T  37996176 actaaaactaataacaaagcaaaacataggggaccaaattgatacaaattatagttaagggaccaaattgaaacaatcattttaattaagggatcaggtg 37996077  T
Q  147 attgaataa 155  Q
    |||||||||    
T  37996076 attgaataa 37996068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 2623451 - 2623498
Alignment:
Q  111 aaattgagacaattaattaagttaagggaccggatgattgaataagcc 158  Q
    ||||||||||||| ||||||||||||||||||  ||||||||||||||    
T  2623451 aaattgagacaatcaattaagttaagggaccgagtgattgaataagcc 2623498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 140
Target Start/End: Complemental strand, 9738219 - 9738136
Alignment:
Q  57 gtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggac 140  Q
    |||||| |||||||| ||| |||| || ||||||||||||||| ||||||||| || |||  ||||  ||||||||||||||||    
T  9738219 gtaacggagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttggtacaaacaattaagttaagggac 9738136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 47097001 - 47096947
Alignment:
Q  39 cagaaagaactaaaactagtaacgaagcaaaacata-ggggaccaaattggtaca 92  Q
    ||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||    
T  47097001 cagaaaggactaaaactagtaatggagcaaaacatagggggaccaaattggtaca 47096947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 39161488 - 39161436
Alignment:
Q  40 agaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 92  Q
    |||||| ||||||||||| |||| | ||||||||| |||||||||||||||||    
T  39161488 agaaaggactaaaactaggaacggatcaaaacatatgggaccaaattggtaca 39161436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 9738937 - 9739011
Alignment:
Q  66 caaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggac 140  Q
    |||||| ||| |||| || ||||||||||||||| ||||||||| || |||| ||||  ||| ||||||||||||    
T  9738937 caaaacttagaggacgaatttggtacaaattatatttaggggaccaatttgatacaaacaatcaagttaagggac 9739011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 108111 - 108047
Alignment:
Q  42 aaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggg 106  Q
    |||| |||||||||||||| | ||||||||| || ||||||||||| |||||||||| |||||||    
T  108111 aaaggactaaaactagtaatggagcaaaacacagaggaccaaattgatacaaattatggttaggg 108047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 61042 - 61151
Alignment:
Q  32 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 131  Q
    |||||| ||||||| ||  |||||  ||||| |||||||| ||| |||| || ||||||||||||| | ||| ||||| || |||  ||||  |||||||    
T  61042 aaactaacagaaaggacctaaactgataacggagcaaaacttagaggacgaatttggtacaaattaaatttaagggaccaatttggtacaaacaattaag 61141  T
Q  132 ttaagggacc 141  Q
    ||||||||||    
T  61142 ttaagggacc 61151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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