View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751_low_10 (Length: 477)
Name: NF5751_low_10
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 58 - 465
Target Start/End: Complemental strand, 525733 - 525326
Alignment:
| Q |
58 |
ccaattgtagtatatattatttatttaaataattttatttgaaatgataacagtgcagcaggagagaaacatgggtttgtacacacgtacagctgtgagt |
157 |
Q |
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| T |
525733 |
ccaattgtagtatatattatttatttaaataattttatttgaaatgataacagtgcagcaggagagaaacatgggtttgtacacacgtacagctgtgagt |
525634 |
T |
|
| Q |
158 |
ctgtgactgcggcgagggagtgagcgaaatggtttgttattttttgtcctttctctcttttgttctcatcctcctaatcacacgcaacgcagcgtccttt |
257 |
Q |
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| T |
525633 |
ctgtgactgcggcgagggagtgagcgaaatggtttgttattttttgtcctttctctcttttgttctcatcctcctaatcacacgcaacgcagcgtccttt |
525534 |
T |
|
| Q |
258 |
attcttttttcctaggacttgaatcacttatttcactactatactagctagtggtattaaataaaatagtaacctcaactgtttcagggacgaattcatt |
357 |
Q |
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| T |
525533 |
attcttttttcctaggacttgaatcacttatttcactactatactagctagtggtattaaataaaatagtaacctcaactgtttcagggacgaattcatt |
525434 |
T |
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| Q |
358 |
taattttattcaacatgcaaaattcaatcgtatattttttaaaggaacctccaaatagttagtttattgttcgctttcttttccccaaatttcatttttc |
457 |
Q |
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| T |
525433 |
taattttattcaacatgcaaaattcaatcgtatattttttaaaggaacctccaaatagttagtttattgttcgctttcttttccccaaatttcatttttc |
525334 |
T |
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| Q |
458 |
cctttgct |
465 |
Q |
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|||||||| |
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| T |
525333 |
cctttgct |
525326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 525838 - 525777
Alignment:
| Q |
1 |
tttttcttaataaataattggactagtgtgatcttgttcaatcaaattctcaactttccaat |
62 |
Q |
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| T |
525838 |
tttttcttaataaataattggactagtgtgatcttgttcaatcaaattctcaactttccaat |
525777 |
T |
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