View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751_low_11 (Length: 439)
Name: NF5751_low_11
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 10 - 428
Target Start/End: Complemental strand, 39932050 - 39931632
Alignment:
| Q |
10 |
atcagatatatcaggtgttgttgaaactcattaaccatcgatataacttcagtaatttcgtgcctaacgaagttacatagatggttaatgagttttaaca |
109 |
Q |
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| T |
39932050 |
atcagatatatcaggtggtgttgaaactcattaaccatcgatataacttcagtaatttcgtgcctaacgaagttacattgattgttaatgagttttaaca |
39931951 |
T |
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| Q |
110 |
ccacctaaatgtaattagccatatatttaaactttttaaccacataaaatagttcttgcaaaagcaaaagttgtctgaaattggttgttcaaaaattatt |
209 |
Q |
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| T |
39931950 |
ccacctaaatgtaattagccatatatttaaactttttaaccacataaaatagttcttgcaaaagcgaaagttgtctgaaattggttgttaaaaaattatt |
39931851 |
T |
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| Q |
210 |
tctcattttctatttttctacttgattaggcttgttctgttgtgtcgtgtgtaatgaatacttactatagctatgcatttattgtttgtgatgtttcagt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39931850 |
tctcattttctatttttctacttgattaggcttgttctgttgtgtcgtgtgtaatgaatacttactatagctatgcatttattgtttgtgatgtttcagt |
39931751 |
T |
|
| Q |
310 |
gattttgtggcattttaagtagtcccatttaaaagtgatcagaattcagacatatttttcaacgatttctgattgttgcatcaatggtagtcgaggcttt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39931750 |
gattttgtggcattttaagtagtcccatttaaaagtgatcagaattcagacatatttttcaacgatttctgattgttgcatcaatggtagtcgaggcttt |
39931651 |
T |
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| Q |
410 |
ggttcctctgcttgagtat |
428 |
Q |
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| T |
39931650 |
ggttcctctgcttgagtat |
39931632 |
T |
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