View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751_low_18 (Length: 360)
Name: NF5751_low_18
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 12 - 149
Target Start/End: Original strand, 436088 - 436225
Alignment:
| Q |
12 |
acagagattccagtttacaagcttcaagattgaaatgtagacgataagggatgaattatcatctctagctaatccttttgcagttatggtttggcctttg |
111 |
Q |
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| T |
436088 |
acagagattccagtttacaagcttcaagattgcaatgtagacgataagggatgaattatcatctctagctaatccttgtgcagttatggtttggcctttg |
436187 |
T |
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| Q |
112 |
aatcttgtgttttagaaaacaaattggcatgacttctc |
149 |
Q |
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| T |
436188 |
aatcttgtgttttagaaaacaaattggcatgacttctc |
436225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 223 - 348
Target Start/End: Original strand, 436302 - 436440
Alignment:
| Q |
223 |
gactaaagatcataaatgaatcttgtggatcatacaccaatagattcagagtcaccaggtaaaaacattaacct-------------ccacatccaacaa |
309 |
Q |
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| T |
436302 |
gactaaagatcataaatgaatcttgtggatcatacaccaatagattcagagtcaccaggtaaaagcattaacctccacatatcatacccacatccaacaa |
436401 |
T |
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| Q |
310 |
tcaactgaagaaacatgaatatgatgtagtgaatgatga |
348 |
Q |
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| T |
436402 |
tcaactgaagaaacatgaatatgatgtagtgaataatga |
436440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 11241609 - 11241493
Alignment:
| Q |
17 |
gattccagtttacaagcttcaagattgaaatgtagacgataagggatgaattatcatctctagctaatccttttgcagttatggtttggcctttgaatct |
116 |
Q |
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| T |
11241609 |
gattccagtttacaagcttcaatgttacaacgaagactatcagggat-aattctcatctctagataatccttgtgcagttgtggtttggcatttgaagct |
11241511 |
T |
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| Q |
117 |
tgtgttttagaaaacaaa |
134 |
Q |
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| T |
11241510 |
tgtgttttagaaaacaaa |
11241493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 18395132 - 18395088
Alignment:
| Q |
290 |
ttaacctccacatccaacaatcaactgaagaaacatgaatatgat |
334 |
Q |
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| T |
18395132 |
ttaacctccacaaccaacaatcaactgaagaaacttgaacatgat |
18395088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 18395547 - 18395499
Alignment:
| Q |
238 |
atgaatcttgtggatcatacaccaatagattcagagtcaccaggtaaaa |
286 |
Q |
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| T |
18395547 |
atgaatcttgtggatcaaataccaatagattcaaattcaccaggtaaaa |
18395499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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