View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5751_low_20 (Length: 346)
Name: NF5751_low_20
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_low_20 |
 | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 7328218 - 7328533
Alignment:
| Q |
19 |
gtcttggactaaattctttacatttagctatcacaaccttcaagtgaatttaaattcaagatttgtttactcgtggttgaaattaaaggcattgcatctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7328218 |
gtcttggactaaattctttacatttagctatcacaaccttcaagtgaatttaaattcaagatttgtttactcgtggttgaaattaaaggcattgcatctt |
7328317 |
T |
|
| Q |
119 |
tctgaagatggtgatacaatcgtattcgcaagctgcctacataaccaagcaattctctataacttgagaactaatagactactggaatctagagttaaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7328318 |
tctgaagatggtgatacaatcgtattcgcaagctgcctgcataaccaagcaattctctataacttgagaactaatagagtactggaatctagagttaaca |
7328417 |
T |
|
| Q |
219 |
aaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtttttctccaacataatatttatttcaatttatg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7328418 |
aaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaaagtaagtttttctccaacataatatttatttcaatttatg |
7328517 |
T |
|
| Q |
319 |
tacttagttttgcctt |
334 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7328518 |
tacttagttttgcctt |
7328533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 7311240 - 7310936
Alignment:
| Q |
19 |
gtcttggactaaattctttacatttagctatcacaaccttcaagtgaatttaaattcaagatttgtttactcgtggttgaaattaaaggcattgcatctt |
118 |
Q |
| |
|
|||||||||| | || |||||||||||||||||||| |||| | ||||||||||||||||| ||||||||||| |||||||||||||| | ||||||||| |
|
|
| T |
7311240 |
gtcttggactcagttatttacatttagctatcacaatcttcgaatgaatttaaattcaagagttgtttactcgaggttgaaattaaagccgttgcatctt |
7311141 |
T |
|
| Q |
119 |
tctgaagatggtgatacaatcgtattcgcaagctgcctacataaccaagcaattctctataacttgagaactaatagactactggaatctagagttaaca |
218 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
7311140 |
tctgaagatggtgatacaatagtattcggaagctgcctagataaccaagcaattctgtataacttgagaactaatagagtactgaaatctagagttaaca |
7311041 |
T |
|
| Q |
219 |
aaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtttttctccaacataatatttatttcaatttatg |
318 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||| || |||||||||||||||||| |||||| |
|
|
| T |
7311040 |
aaaagatatgttggttctctatcaaggattatgtcgaaagtctggtttcaacctattgaaagtaagtttttttctaacataatatttatttcagtttatg |
7310941 |
T |
|
| Q |
319 |
tactt |
323 |
Q |
| |
|
||||| |
|
|
| T |
7310940 |
tactt |
7310936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 104 - 329
Target Start/End: Complemental strand, 7306603 - 7306378
Alignment:
| Q |
104 |
aaggcattgcatctttctgaagatggtgatacaatcgtattcgcaagctgcctacataaccaagcaattctctataacttgagaactaatagactactgg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
7306603 |
aaggcattgcatctttctgaagatggtgatacaatcgtattcgcaagctgcctagataaccaagcaattctgtataacttgagaactaatagagtactga |
7306504 |
T |
|
| Q |
204 |
aatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtttttctccaacataatat |
303 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||| ||| |||||||||||||||||||| |
|
|
| T |
7306503 |
aatctagagtcaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtctcaacctattgaacgtaggtttttctccaacataatat |
7306404 |
T |
|
| Q |
304 |
ttatttcaatttatgtacttagtttt |
329 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
7306403 |
ttatttcaatttatgtacttggtttt |
7306378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 95 - 292
Target Start/End: Complemental strand, 35205863 - 35205658
Alignment:
| Q |
95 |
ttgaaattaaaggcattgcatctttctgaagatggtgatacaatcgtattcgca---agctgcctacataaccaagcaatt-----ctctataacttgag |
186 |
Q |
| |
|
|||| ||||| | |||||||||||||||| |||||||||||| ||||||||||| | | |||| | |||||| |||| |||||||||| ||| |
|
|
| T |
35205863 |
ttgatattaatgccattgcatctttctgaggatggtgatacactcgtattcgcagcaaacaacctaaaacaccaagtaattatattctctataactggag |
35205764 |
T |
|
| Q |
187 |
aactaatagactactggaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtt |
286 |
Q |
| |
|
||| |||||| ||||| ||||| | ||||||| ||||||||||||| | |||||||||||||||||||||| ||||||||||| | |||||||||||| |
|
|
| T |
35205763 |
aaccaatagagtactgaaatcttcaattaacaataagatatgttggttcactatcaaggattatgtcgaaagcctggtttcaactagttgaatgtaagtt |
35205664 |
T |
|
| Q |
287 |
tttctc |
292 |
Q |
| |
|
||||| |
|
|
| T |
35205663 |
gttctc |
35205658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 270
Target Start/End: Original strand, 20414999 - 20415161
Alignment:
| Q |
108 |
cattgcatctttctgaagatggtgatacaatcgtattcgcaagctgcctacataaccaagcaattctctataacttgagaactaatagactactggaatc |
207 |
Q |
| |
|
|||||||||||| || ||||||||||| | |||||||||| | ||||||| ||| ||||||||||||||| | ||||| ||||| | || || || | |
|
|
| T |
20414999 |
cattgcatcttttcaaaaatggtgatacacttgtattcgcaaacagcctacaagaccgagcaattctctataattggagaaataatatagtattgaaacc |
20415098 |
T |
|
| Q |
208 |
tagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaac |
270 |
Q |
| |
|
||||||||||| || | |||||||| ||||||||| |||||| ||||||||||||||||| |
|
|
| T |
20415099 |
cagagttaacaataacaaatgttggttctctatcaactgttatgttgaaagtctggtttcaac |
20415161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 95 - 269
Target Start/End: Complemental strand, 21210420 - 21210247
Alignment:
| Q |
95 |
ttgaaattaaaggcattgcatctttctgaagatggtgatacaatcgtattcgcaagctgcctacataaccaagcaattctctataacttgagaactaata |
194 |
Q |
| |
|
|||||||||||| | |||||||||||||| || ||||||||| ||||||| || | ||| || ||||||||| |||| |||||||| |||| ||||| |
|
|
| T |
21210420 |
ttgaaattaaagccggtgcatctttctgaaaatattgatacaatagtattcgtaaacaacctgcaaaaccaagcagttctatataacttcagaaataata |
21210321 |
T |
|
| Q |
195 |
gactactggaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaa |
269 |
Q |
| |
|
| ||||| |||| | | ||||| | |||||| |||||| || || | |||||||||||| |||||||||||||| |
|
|
| T |
21210320 |
cagtactgaaatccaaaattaaccataagatacgttggttctgtaccgaggattatgtcg-aagtctggtttcaa |
21210247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 21218553 - 21218469
Alignment:
| Q |
207 |
ctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtttttct |
291 |
Q |
| |
|
||||| |||||||||||||| |||||| ||| || | |||||||||||||| |||||||||| | |||| ||||||| |||| |
|
|
| T |
21218553 |
ctagaattaacaaaaagataagttggtcctcagtctatgattatgtcgaaagcttggtttcaacttcttgaaagtaagttcttct |
21218469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 167 - 292
Target Start/End: Complemental strand, 31442874 - 31442749
Alignment:
| Q |
167 |
gcaattctctataacttgagaactaatagactactggaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggttt |
266 |
Q |
| |
|
|||||||||||||| | ||||| ||||||| || || || ||||||||||||||||||||||||||| |||||| || ||||||||||||| |||||| |
|
|
| T |
31442874 |
gcaattctctataattggagaaataatagagtagtgaaaactagagttaacaaaaagatatgttggttctctataaaccattatgtcgaaagcttggttt |
31442775 |
T |
|
| Q |
267 |
caacctgctgaatgtaagtttttctc |
292 |
Q |
| |
|
|||| | |||| ||||||| ||||| |
|
|
| T |
31442774 |
caacaagttgaaagtaagttcttctc |
31442749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 292
Target Start/End: Original strand, 24360 - 24491
Alignment:
| Q |
161 |
aaccaagcaattctctataacttgagaactaatagactactggaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtc |
260 |
Q |
| |
|
|||| ||||||||||||||| | || || ||||||| || || || |||| |||||||||||||||||||||| ||||| || ||||||| ||||| |
|
|
| T |
24360 |
aaccgagcaattctctataattggataaataatagagtagtgaaaactagggttaacaaaaagatatgttggtgatctataaacaattatgttgaaagca |
24459 |
T |
|
| Q |
261 |
tggtttcaacctgctgaatgtaagtttttctc |
292 |
Q |
| |
|
||||| |||| || ||| ||||||| ||||| |
|
|
| T |
24460 |
tggttccaacttgttgagagtaagttcttctc |
24491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 291
Target Start/End: Original strand, 42298342 - 42298420
Alignment:
| Q |
213 |
ttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtttttct |
291 |
Q |
| |
|
|||||| |||||||||||||| ||| || || |||||||||||||| |||||||||| | |||| ||||||| |||| |
|
|
| T |
42298342 |
ttaacagaaagatatgttggtcctcaatgaaagattatgtcgaaagcttggtttcaacttcttgaaagtaagttcttct |
42298420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University