View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751_low_21 (Length: 344)
Name: NF5751_low_21
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_low_21 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 3087957 - 3087631
Alignment:
| Q |
18 |
ataagttaccattgacatggggaggtaacaaatgatgaactgcttctgatgcctcaggctttaaaagtgcctatcaatcatatagaaatcatcaattact |
117 |
Q |
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| T |
3087957 |
ataagttaccattgacatggggaggtaacaaatgatgaactgcttctgatgcctcaggctttaaaagtgcctatcaatcatatagaaatcatcaattact |
3087858 |
T |
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| Q |
118 |
ttatcataattatgattccaataatacccttcaagaataacagttatttgaattagcccttatacttattcataaccagcttgacaatcatttgatacat |
217 |
Q |
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| T |
3087857 |
ttatcataattatgattccaataatacccttcaagaataacagttatttgaattagcccttatacttattcataaccagcatgacaatcatttgatacat |
3087758 |
T |
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| Q |
218 |
tagctatgtatatgtttggttcacatttgtatttcttagaattgtcaattgtttttaggttactgaaacgtgatttgactataaatagttatgtttcgct |
317 |
Q |
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| T |
3087757 |
tagctatgtatatgtttggttcacatttgtatttcttagaattgtcaattgtttttaggttactgaaacgtgatttgactataaatagttatgtttcgct |
3087658 |
T |
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| Q |
318 |
ttggattttagaattgattttaggtta |
344 |
Q |
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| T |
3087657 |
ttggattttagaattgattttaggtta |
3087631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 264 - 344
Target Start/End: Complemental strand, 3087646 - 3087566
Alignment:
| Q |
264 |
aattgtttttaggttactgaaacgtgatttgactataaatagttatgtttcgctttggattttagaattgattttaggtta |
344 |
Q |
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| T |
3087646 |
aattgattttaggttagtgatacgtgatttgaccataaatagttatgtttcgcttttgattttagaattgattttaggtta |
3087566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 337
Target Start/End: Original strand, 34922119 - 34922185
Alignment:
| Q |
271 |
tttaggttactgaaacgtgatttgactataaatagttatgtttcgctttggattttagaattgattt |
337 |
Q |
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| T |
34922119 |
tttaggttagttaaacttgatttgactataaattgttatgtttggcttccgactttggaattgattt |
34922185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 318
Target Start/End: Original strand, 34898736 - 34898768
Alignment:
| Q |
286 |
cgtgatttgactataaatagttatgtttcgctt |
318 |
Q |
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| T |
34898736 |
cgtgatttgactataaattgttatgtttcgctt |
34898768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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