View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751_low_23 (Length: 324)
Name: NF5751_low_23
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 12 - 310
Target Start/End: Original strand, 49698694 - 49698992
Alignment:
| Q |
12 |
atgaacatgatggaaaatcataatggagatggaattctcccggaacacgatgatggcagcatgtacagcctcaccggcggagctccacttccgcctctag |
111 |
Q |
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| T |
49698694 |
atgaacatgatggaaaatcataatggagatggaattctcccggaacacgatgatggcagcatgtacagcctcactggcggagctccacttccgcctctag |
49698793 |
T |
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| Q |
112 |
gcgatttcggagccaaaagaaccaaactccgtcgaagaaccatctcccccaatgaccgtcgctacaggtatgctt-gttattaatttttgttatataatt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49698794 |
gcgatttcggagccaaaagaaccaaactccgtcgaagaaccatctcccccaatgaccgtcgctacaggtatgcttcgttattaatttttgttatataatt |
49698893 |
T |
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| Q |
211 |
cttatatctgcgtgaaaccgtataaactaatcattttgttcttaattagtaagttaatttcttgnnnnnnnnggcatgcagatggtggcagatgtttttg |
310 |
Q |
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| T |
49698894 |
cttatatctgcgtgaaaccgtataaactaatcattttgttcttaattagtaagttaatttcttg-tttttttggcatgcagatggtggcagatgtttttg |
49698992 |
T |
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