View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751_low_24 (Length: 309)
Name: NF5751_low_24
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 4333000 - 4332719
Alignment:
| Q |
18 |
gttttaaattcttttatcaatagaaatagtattaaactaaaaatggatatttnnnnnnnnnn-tgatgaaagatggataagaatggtatatccgtattag |
116 |
Q |
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| T |
4333000 |
gttttaaattcttttataaatagaaatagtattaaactaaaaatggatatttttaaaaaaaaatgatgaaagatggataagaatggtatatccgtattag |
4332901 |
T |
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| Q |
117 |
gatgatatacattttttcttttgaggcaacatgactaagtatttatcataagtagaatgctatagaattgtcttatagagcactagtttttgtctttttg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
4332900 |
gatgatatacattttttcttttgaggcaacatgactaagtatttataataagtagaatgctatagaattgtcttagagagcactagcttttgtctttttc |
4332801 |
T |
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| Q |
217 |
tcgaataacataatgactagaacttatatgttttaatcgtagaaaagtgtggagtctcatattcgaactccgatataatatt |
298 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| || |||||||| |
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| T |
4332800 |
tcgaataacataatgactagaacttacatgttttaatcgtagaaaagtgtggagtctcggattcgaactctgacataatatt |
4332719 |
T |
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