View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751_low_28 (Length: 284)
Name: NF5751_low_28
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_low_28 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 6968217 - 6967952
Alignment:
| Q |
19 |
caaatatcacatgactccacttacctcccctttcatattcaccattacctgtgcaatttgtgtaaagctttctctgcctcttacttagaccaatttcttt |
118 |
Q |
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| T |
6968217 |
caaatatcacatgactccacttacctcccctttcatattcaccattacctgtgcaatttgtgtaaagctttctctgcctcttacttagaccaatttcttt |
6968118 |
T |
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| Q |
119 |
accttgttccaaaacatggttaaggtaagatttctcaacgaaatcgcgatgactacgatgaaatgtgagaaggtagaatcttttgtctgaagctggatag |
218 |
Q |
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| T |
6968117 |
accttgttccaaaacatggttaaggtaagatttctcaacgaaatcgcgatgactacgatgaaatgtgagaaggtagaatcttttgtctgaagctggatag |
6968018 |
T |
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| Q |
219 |
aatgaaacagaatttgtgttggggacaatcttgattagactccaaacaaacttaaccccttcaaac |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968017 |
aatgaaacagaatttgtgttggggacaatcttgattagactccaaacaaacttaaccccttcaaac |
6967952 |
T |
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