View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751_low_3 (Length: 801)
Name: NF5751_low_3
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 29 - 629
Target Start/End: Complemental strand, 18512130 - 18511535
Alignment:
| Q |
29 |
aactttgttacttttggaccatgcaggatcaccataagctgaagaaatttg-tgtttcatctgctcctcccaataagcaaaggaactgatcatgctcata |
127 |
Q |
| |
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|||||||||||||| |||||| |||||||||| ||||||| ||| || | | ||||||||| | |||||| ||||||| | |||||||||||||||| |
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| T |
18512130 |
aactttgttacttt-ggaccaagcaggatcacgataagcttaagcaactgcatatttcatctgattctcccagtaagcaa-gacactgatcatgctcata |
18512033 |
T |
|
| Q |
128 |
caaagaggtcctcgtgaattgttaatgctagcttgtgttgatctagcactgaagcaagctgtgccctgctgtttgtcctgtat-tattgnnnnnnnnnnn |
226 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
18512032 |
caaagaggtcctcgtgaattgttaatgctagcttgtgttgatctagcactgaagcaaactgtgccctgctgtttgtcctgtagatattgtttttattttt |
18511933 |
T |
|
| Q |
227 |
nnnnnngattgcatggataatatatcatatggtgttgaagacataattacatttcacttgtttcttggtacatccgtaggttgtttccttgtttcctcat |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18511932 |
tattttgattgcatggataatatatcatatggtgttgaagacataattacatttcacttgtttcttggtacatccgtaggttgtttccttgtttcctcat |
18511833 |
T |
|
| Q |
327 |
ccgtaggttaattttgaatctgcaaaatgttctgttgtgaacaatgttt-tcagatggtaagtatcttagtacatgatgannnnnnnnnnaaattggcct |
425 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||| |
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| T |
18511832 |
ccgtaggttacttttgaatctgcaaaatgttctgttgtgaacaatgtttagcagatgataagtatcttagtacatgatga---ttttttgaaattggcct |
18511736 |
T |
|
| Q |
426 |
gcgaagtttattgtgtggcagattccatgcaatacatgtgttatgaattactcattccagcctttttgaactctatgaggtggctagattgtggtgcatt |
525 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||| ||||||||| ||||||||||| ||| |
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| T |
18511735 |
gcgaagtttattgtgtggcagattccatgcaagacatgtgttatgaattactcattcaaagctttttgaactc--tgaggtggccagattgtggtgaatt |
18511638 |
T |
|
| Q |
526 |
agttttaaaagctattgttgttgttcttgaccaagaag-ctatcatccttggtttttatagaagatggagaagtttattcactatgtaaactgggaagtg |
624 |
Q |
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|| ||||| | || || |||||||||||||||||||| ||||||| | ||||||||| |||||||||||||| ||||||||||||| | |||||||| |
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| T |
18511637 |
aggtttaagtgttactgctgttgttcttgaccaagaagcctatcat--taggtttttatggaagatggagaagtatattcactatgtagattgggaagtt |
18511540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 1984742 - 1984660
Alignment:
| Q |
55 |
gatcaccataagctgaagaaatttgtgtttcatctgctcctcccaataagcaaaggaactgatcatgctcatacaaagaggtcct |
139 |
Q |
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| T |
1984742 |
gatcaccataagctgaagaaact-gtgtttcatg-gctcctcccaaaaagcaaaggaactgatcatattcatacagagaggtcct |
1984660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 8e-51; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 25 - 163
Target Start/End: Complemental strand, 6920384 - 6920247
Alignment:
| Q |
25 |
aatcaactttgttacttttggaccatgcaggatcaccataagctgaagaaatttgtgtttcatctgctcctcccaataagcaaaggaactgatcatgctc |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6920384 |
aatcaactttgttacttttggaccatgcaggatcaccataagctaaagaaatt-gtgttttatctgctcctcccaataagcaaaggaactgatcatgctc |
6920286 |
T |
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| Q |
125 |
atacaaagaggtcctcgtgaattgttaatgctagcttgt |
163 |
Q |
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|||||||||||| ||| | || ||||||||||| ||||| |
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| T |
6920285 |
atacaaagaggttctcatcaactgttaatgctaccttgt |
6920247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 6953554 - 6953392
Alignment:
| Q |
25 |
aatcaactttgttacttttggaccatgcaggatcaccataagctgaagaaatttgtgtttcatctgctcctcccaataagcaaaggaactgatcatgctc |
124 |
Q |
| |
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|||||||||| |||||||| ||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
6953554 |
aatcaacttttttacttttagaccaagcaggatcaccataagctaaagaaattt-tgtttcatctgctcctcccaataagcaaaggaattgatcaagctc |
6953456 |
T |
|
| Q |
125 |
atacaaagaggtcctcgtgaattgttaatgctagcttgtgttgatctagcactgaagcaagctg |
188 |
Q |
| |
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|||||||||||||||| | |||||||||||||| ||||| | |||| |||| ||||||| |||| |
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| T |
6953455 |
atacaaagaggtcctcatcaattgttaatgctaccttgtttagatcaagcaatgaagcaggctg |
6953392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 25 - 183
Target Start/End: Complemental strand, 6944589 - 6944430
Alignment:
| Q |
25 |
aatcaactttgttacttttggaccatgcaggatcaccataagctgaagaaatttgtgtttcatctgctcctcccaataagcaaaggaa--ctgatcatgc |
122 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||| ||| |||||||||||| | |||||||||| |
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| T |
6944589 |
aatcaactttgttacttttggaccaagcaggatcaccataagctgaagaaa-cagtttttcatctgctcatcctaataagcaaaggcactctgatcatgc |
6944491 |
T |
|
| Q |
123 |
tcatacaaagaggtcctcgtgaattgttaatgctagcttgtgttgatctagcactgaagca |
183 |
Q |
| |
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||||| |||||||||||| | || ||||||| ||| ||||| ||||| |||| ||||||| |
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| T |
6944490 |
tcatataaagaggtcctcatcaactgttaattctaccttgttttgatgaagcaatgaagca |
6944430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 6934223 - 6934130
Alignment:
| Q |
25 |
aatcaactttgttacttttggaccatgcaggatcaccataagctgaagaaatttgtgtttcatctgctcctcccaataagcaaaggaactgatca |
119 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||| |
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| T |
6934223 |
aatcaactttgttactttttgaccatgcaggatcaccataagctgaagaaa-ctgtgtttcatttgctcctcccaataagcaaaggtactgatca |
6934130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 6941963 - 6941897
Alignment:
| Q |
25 |
aatcaactttgttacttttggaccatgcaggatcaccataagctgaagaaatttgtgtttcatctgct |
92 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
6941963 |
aatcaactttgttacttttggaccaagcaggatcagcataagctgaagaaa-ttgtgtttcatctgct |
6941897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 29 - 206
Target Start/End: Original strand, 14517333 - 14517509
Alignment:
| Q |
29 |
aactttgttacttttggaccatgcaggatcaccataagctgaagaaattt-gtgtttcatctgctcctcccaataagcaaaggaactgatcatgctcata |
127 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||| || | || |||||||| | |||| | |||||| || |||||||||||||||| |
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| T |
14517333 |
aactttgttacttt-ggaccaagcaggatcaccataagctgaagcaactacgtacttcatctgattctcctagcaagcaa-ggcactgatcatgctcata |
14517430 |
T |
|
| Q |
128 |
caaagaggtcctcgtgaattgttaatgctagcttgtgttgatctagcactgaagcaagctgtgccctgctgtttgtcct |
206 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| ||||||| ||| |||| |
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|
| T |
14517431 |
catagaggtcctcgtgaattgttaatggtagcttgttttgatctagcactgaagcagactgttccctgctatttatcct |
14517509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 14517536 - 14517611
Alignment:
| Q |
233 |
gattgcatggataatatatcatatggtgttgaagacataattacatttcacttgtttcttggtacatccgtaggtt |
308 |
Q |
| |
|
||||||||| |||||||||||| || |||||||| | || ||||||||||| | |||| |||||||| |||||||| |
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|
| T |
14517536 |
gattgcatgaataatatatcatgtgatgttgaaggcgtatttacatttcacatctttcatggtacattcgtaggtt |
14517611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 13112662 - 13112735
Alignment:
| Q |
239 |
atggataatatatcatatggtgttgaagacataattacatttcacttgtttcttggtacatccgtaggttgttt |
312 |
Q |
| |
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||||||||| ||| |||| |||||||| |||| ||||||| ||| ||||||||||||||| | ||||||||| |
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| T |
13112662 |
atggataatttattctatgatgttgaaggcatatttacattacacatgtttcttggtacatttgaaggttgttt |
13112735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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