View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751_low_31 (Length: 282)
Name: NF5751_low_31
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 267
Target Start/End: Complemental strand, 19057608 - 19057354
Alignment:
| Q |
13 |
aatatcatgatggtgatagtaataggccaactgtaagttgataaacatgatatagctagtattcggattttgatatatttttgtttcaattacgtagaaa |
112 |
Q |
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| T |
19057608 |
aatatcatgatggtgatagtaataggccaactgtaagttgataaacatgatatagctagtattcggattttgatatatttttgtttcaattacatagaaa |
19057509 |
T |
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| Q |
113 |
tgtttaattaagtatttaactaattatttaatcgcgtgataatatgcgcacatatgcaggcttttcaatttacagggtgtgaaagtctaacaataagcaa |
212 |
Q |
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| T |
19057508 |
tgtttaattaagtatttaactaattatttagtcacgtgataatatgcgcacatatgcaggcttttcaatttatagggtgcgaaagtctaacaataagcaa |
19057409 |
T |
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| Q |
213 |
cttgaatcacattaacagcccaagaaatcatataagtatagattcatgcaaaaac |
267 |
Q |
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| T |
19057408 |
cttgaatcacattaacagcccaagaaatcatataagtatagattcatgcaaaaac |
19057354 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 38096661 - 38096730
Alignment:
| Q |
198 |
tctaacaataagcaacttgaatcacattaacagcccaagaaatcatataagtatagattcatgcaaaaac |
267 |
Q |
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| T |
38096661 |
tctaacacttagcaacttgaatcacatgaatagtccgaagaatcatataagtgtagattcatgcaaaaac |
38096730 |
T |
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