View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751_low_32 (Length: 281)
Name: NF5751_low_32
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 59 - 270
Target Start/End: Complemental strand, 4195843 - 4195635
Alignment:
| Q |
59 |
ccaaacgatgttaccggctaaaggaagaaagtgttggagggttaaagagaatgaagatttgagaattggaacaagtttttggaaaaagaaagaagtgtgt |
158 |
Q |
| |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4195843 |
ccaaacgattttaccagctaaaggaagaaagtgttggagggttaaagagaatgaagatttgagaattggaacaagtttttggaaaaagaaagaagtgtgt |
4195744 |
T |
|
| Q |
159 |
gaatgtgaatttgggagggtgtagaagaaaacacgttctaccggatggaacctaagccaaaatatgtcaaagtaagtaagaggggttgttgttgtttttt |
258 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4195743 |
gaatgtgaatttgggagggtgtagaagaaaacacgttctaccggatggaacctaagccaaaatatgtcaaagtaagtaagaggggttgt---tgtttttt |
4195647 |
T |
|
| Q |
259 |
gggttgatgatg |
270 |
Q |
| |
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|||||||||||| |
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| T |
4195646 |
gggttgatgatg |
4195635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 4233638 - 4233384
Alignment:
| Q |
13 |
catcatttggtgtgtattgtatttttgggttttgtgattcaaaatcccaaacgatgttaccggctaaaggaagaaagtgttggagggttaaagagaatga |
112 |
Q |
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|||||||||| || ||||| ||| |||| | ||| ||||| ||| ||||||||||||||| |||||||| ||||||| | |||||||||||||| ||| |
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| T |
4233638 |
catcatttggagtatattggattattggttcttgagattctaaaggccaaacgatgttaccagctaaagggagaaagtccttgagggttaaagagagtga |
4233539 |
T |
|
| Q |
113 |
agatttgagaattggaacaagtttttggaaaaagaaagaagtgtgtgaatgtgaatttgggagggtgtagaagaaaacacgttctaccggatggaaccta |
212 |
Q |
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||||||||||||||||||||| || | ||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
4233538 |
agatttgagaattggaacaagcttcttgaagaagaaagaagggtgtgaatgtgaatttgggagggcgtagaagaaaacacgttctactggatggaacctt |
4233439 |
T |
|
| Q |
213 |
agccaaaatatgtcaaagtaagtaagaggggttgttgttgttttttgggttgatgatg |
270 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
4233438 |
agccaaaatatgtcaaagtaagtaagaggggttgt---tgttttttgagttgatgatg |
4233384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 4241426 - 4241213
Alignment:
| Q |
13 |
catcatttggtgtgtattgtatttttgggttttgtgattcaaaatcccaaacgatgttaccggctaaaggaagaaagtgttggagggttaaagagaatga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| |
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| T |
4241426 |
catcatttggtgtgtattgtatttttgggttttgtgattcaaaatcccaaacgatgttaccggctaaaggaagaaagtgttggagggtcaaagaaagtga |
4241327 |
T |
|
| Q |
113 |
agatttgagaattggaacaagtttttggaaaaagaaagaagtgtgtgaatgtgaatttgggagggtgtagaagaaaacacgttctaccggatggaaccta |
212 |
Q |
| |
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|||||| ||| ||||||||| | |||| || ||||| ||||||| ||| ||||||||||||||||||||||| || | ||||| ||||||||||| |
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| T |
4241326 |
agatttaagatttggaacaattgtttgaaagaagaatgaagtgtctgattgtgaatttgggagggtgtagaataagatgtattctattggatggaacctt |
4241227 |
T |
|
| Q |
213 |
agccaaaatatgtc |
226 |
Q |
| |
|
|||||||||||||| |
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|
| T |
4241226 |
agccaaaatatgtc |
4241213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 59 - 242
Target Start/End: Complemental strand, 4250620 - 4250437
Alignment:
| Q |
59 |
ccaaacgatgttaccggctaaaggaagaaagtgttggagggttaaagagaatgaagatttgagaattggaacaagtttttggaaaaagaaagaagtgtgt |
158 |
Q |
| |
|
||||||||||||||| |||||||| ||||| ||||||||||||||||||| ||| ||||||||| ||||||||| |||| || |||||||||| |||| |
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|
| T |
4250620 |
ccaaacgatgttaccagctaaagggagaaaatgttggagggttaaagagagtgatgatttgagatttggaacaatcgtttgaaagaagaaagaagggtgt |
4250521 |
T |
|
| Q |
159 |
gaatgtgaatttgggagggtgtagaagaaaacacgttctaccggatggaacctaagccaaaatatgtcaaagtaagtaagaggg |
242 |
Q |
| |
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|| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||| ||||||||||| |
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| T |
4250520 |
gattgtgaatttgggagggtgtagaagaaaactcgttctactggatggaaccttagccaaaatatgtcgaagaaagtaagaggg |
4250437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 4189000 - 4188746
Alignment:
| Q |
13 |
catcatttggtgtgtattgtatttttgggttttgtgattcaaaatcccaaacgatgttaccggctaaaggaagaaagtgttggagggttaaagagaatga |
112 |
Q |
| |
|
||||||||| |||||| || |||||||| | ||| ||||| | |||||| || ||||| |||||||| ||||||||||||||||||||||||| ||| |
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| T |
4189000 |
catcatttgttgtgtactggatttttggttgttgagattctgatggccaaacaattttaccagctaaagggagaaagtgttggagggttaaagagagtga |
4188901 |
T |
|
| Q |
113 |
agatttgagaattggaacaagtttttggaaaaagaaagaagtgtgtgaatgtgaatttgggagggtgtagaagaaaacacgttctaccggatggaaccta |
212 |
Q |
| |
|
||| ||||||||||||| |||||||| || |||||||||| |||||| |||||||||||||||||||| ||||| | ||||||| ||||||||| | |
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| T |
4188900 |
tgatctgagaattggaactagtttttgaaagaagaaagaagggtgtgattgtgaatttgggagggtgtaaaagaagattcgttctataggatggaacttt |
4188801 |
T |
|
| Q |
213 |
agccaaaatatgtcaaagtaagtaagaggggttgttgttgttttttgggttgatgatg |
270 |
Q |
| |
|
| |||||||||||| ||| |||| | ||| ||||||| | ||||||||||||||| |
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|
| T |
4188800 |
atccaaaatatgtcgaagaaagtgaaaggaattgttgtag---tttgggttgatgatg |
4188746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 69 - 255
Target Start/End: Complemental strand, 4192084 - 4191898
Alignment:
| Q |
69 |
ttaccggctaaaggaagaaagtgttggagggttaaagagaatgaagatttgagaattggaacaagtttttggaaaaagaaagaagtgtgtgaatgtgaat |
168 |
Q |
| |
|
||||| |||||||| |||||||||| ||||||||||||| ||||||||||||||||| |||||| |||||||| |||||||||| |||||| |||||| |
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|
| T |
4192084 |
ttaccagctaaagggagaaagtgtttgagggttaaagagggtgaagatttgagaattgtaacaagcttttggaagaagaaagaagggtgtgattgtgaac |
4191985 |
T |
|
| Q |
169 |
ttgggagggtgtagaagaaaacacgttctaccggatggaacctaagccaaaatatgtcaaagtaagtaagaggggttgttgttgttt |
255 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| | | | ||||| |||||||| ||| |||| |||||| |||||| |||| |
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|
| T |
4191984 |
ttgggagggtgtagaagaaaacacgttccactggatatacctttagccataatatgtcgaagaaagtgagagggaatgttgtcgttt |
4191898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 59 - 219
Target Start/End: Complemental strand, 4094995 - 4094835
Alignment:
| Q |
59 |
ccaaacgatgttaccggctaaaggaagaaagtgttggagggttaaagagaatgaagatttgagaattggaacaagtttttggaaaaagaaagaagtgtgt |
158 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||| || |||||||||| |||||||||||| |||||||||| |||| ||| || |||| || |||| |
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|
| T |
4094995 |
ccaaacgatgttaccagctaaagggaggaagtgttgtagagttaaagagagtgaagatttgagttttggaacaagattttcgaagaaaaaagtagggtgt |
4094896 |
T |
|
| Q |
159 |
gaatgtgaatttgggagggtgtagaagaaaacacgttctaccggatggaacctaagccaaa |
219 |
Q |
| |
|
|| |||||| ||||||||||||||||||||| ||||||||||||||| || || ||||||| |
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|
| T |
4094895 |
gagtgtgaacttgggagggtgtagaagaaaatacgttctaccggatgaaatcttagccaaa |
4094835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 59 - 219
Target Start/End: Complemental strand, 4122020 - 4121860
Alignment:
| Q |
59 |
ccaaacgatgttaccggctaaaggaagaaagtgttggagggttaaagagaatgaagatttgagaattggaacaagtttttggaaaaagaaagaagtgtgt |
158 |
Q |
| |
|
||||||||||||||| |||||||| | || | ||||||||||||||||| |||||||||||| |||||||||| |||| | ||||||||||| |||| |
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|
| T |
4122020 |
ccaaacgatgttaccagctaaaggtgggaatttttggagggttaaagagagtgaagatttgagttttggaacaaggttttcaacaaagaaagaagggtgt |
4121921 |
T |
|
| Q |
159 |
gaatgtgaatttgggagggtgtagaagaaaacacgttctaccggatggaacctaagccaaa |
219 |
Q |
| |
|
|| |||||||||||||||||||||||||| | |||||| || ||||| ||||| ||||||| |
|
|
| T |
4121920 |
gattgtgaatttgggagggtgtagaagaagatacgttcaactggatgaaaccttagccaaa |
4121860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 4102543 - 4102417
Alignment:
| Q |
59 |
ccaaacgatgttaccggctaaaggaagaaagtgttggagggttaaagagaatgaagatttgagaattggaacaagtttttggaaaaagaaagaagtgtgt |
158 |
Q |
| |
|
||||||||||||||| |||||||| || |||| ||||||||||||||||| |||| ||||||| |||||||||| |||| |||||| |||||| |||| |
|
|
| T |
4102543 |
ccaaacgatgttaccagctaaagggaggaagttttggagggttaaagagagtgaatatttgagttttggaacaaggttttcaaaaaagtaagaagggtgt |
4102444 |
T |
|
| Q |
159 |
gaatgtgaatttgggagggtgtagaag |
185 |
Q |
| |
|
|| |||||||||||||||||||||||| |
|
|
| T |
4102443 |
gattgtgaatttgggagggtgtagaag |
4102417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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