View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751_low_33 (Length: 277)
Name: NF5751_low_33
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 3191856 - 3191607
Alignment:
| Q |
12 |
aatactgtgctaaaatgaatgctgctaataaacaaaaggccaaaatggggtgaactcaattctcaattagttatcatgaatgagcaacaattaatggaat |
111 |
Q |
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| T |
3191856 |
aatactgtgctaaaatgaatgctgctaataaacaaaaggccaaaatggggtgaactcaattctcaattagttgtcatgaatgagccacaattgatggaat |
3191757 |
T |
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| Q |
112 |
ccaaaatgttcttacgcacatttatattaaaactgaaagcatttgtgttcaagttatgaggtttagaaactgataaaggaatctgtaagttttctctctt |
211 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3191756 |
ccaaaatgttcttatgcacatttatattaaaactgaaagcatttgtgttcaagttatgaggtttagaaactgataaaggaatcgataagttttctctctt |
3191657 |
T |
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| Q |
212 |
acttacctttcttctcatcacttttgtagttgatgctatgagacattttg |
261 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3191656 |
acttacctttcttctcatcacttttgtagttgatgttatgagacattttg |
3191607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 30834319 - 30834120
Alignment:
| Q |
12 |
aatactgtgctaaaatgaatgctgctaataaacaaaaggccaaaatggggtgaactcaattctcaattagttatcatgaatgagcaacaattaatggaat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30834319 |
aatactgtgctaaaatgaatgctgctaataaacaaaaggccaaaatggggtgaactcaattctcaattagttatcatgaatgagcaacaattgatggaat |
30834220 |
T |
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| Q |
112 |
ccaaaatgttcttacgcacatttatattaaaactgaaagcatttgtgttcaagttatgaggtttagaaactgataaaggaatctgtaagttttctctctt |
211 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30834219 |
ccaaaatgttcttatgcacatttatattaaaactgaaagcatttgtgttcaagttatgaggtttagaaactgataaaggaatcggtaagttttctctctt |
30834120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 30833959 - 30833907
Alignment:
| Q |
209 |
cttacttacctttcttctcatcacttttgtagttgatgctatgagacattttg |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30833959 |
cttacttacctttcttctcatcacttttgtagttgatgctatgagacattttg |
30833907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 17687845 - 17687898
Alignment:
| Q |
84 |
atcatgaatgagcaacaattaatggaatccaaaatgttcttacgcacatttata |
137 |
Q |
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||||||||| |||||||||| ||| |||| ||||||||||| ||||||||||| |
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| T |
17687845 |
atcatgaataagcaacaattgatgaaatctgaaatgttcttaagcacatttata |
17687898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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