View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751_low_34 (Length: 274)
Name: NF5751_low_34
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_low_34 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 1774 - 1984
Alignment:
| Q |
18 |
atttcaacctataaaagagtgtgggtgaaaaattaaaatagggttgttgctaaacaaaatccatactccaattaactatggtcaaaagttaaaacacttt |
117 |
Q |
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| T |
1774 |
atttcaacctataaaagagtgtgggtgaaaaattaaaatagggttgttgctaaacaaaatccatactccaattaactatggtcaaaagttaaaacacttt |
1873 |
T |
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| Q |
118 |
tagcaagtaacaccctaaaaggctaaaacagttcatgtgacagttatgttagttttctttcactccaagaaactcttttaccgtcatcttcacttgcaac |
217 |
Q |
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| T |
1874 |
tagcaagtaacaccctaaaaggctaaaacagttcatgtgacagttatgttagttttctttcactccaagaaactcttttaccgtcatcttcacttgcaac |
1973 |
T |
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| Q |
218 |
tgcaactgcaa |
228 |
Q |
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||||||||||| |
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| T |
1974 |
tgcaactgcaa |
1984 |
T |
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Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 3450993 - 3451203
Alignment:
| Q |
18 |
atttcaacctataaaagagtgtgggtgaaaaattaaaatagggttgttgctaaacaaaatccatactccaattaactatggtcaaaagttaaaacacttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3450993 |
atttcaacctataaaagagtgtgggtgaaaaattaaaatagggttgttgctaaacaaaatccatactccaattaactatggtcaaaagttaaaacacttt |
3451092 |
T |
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| Q |
118 |
tagcaagtaacaccctaaaaggctaaaacagttcatgtgacagttatgttagttttctttcactccaagaaactcttttaccgtcatcttcacttgcaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3451093 |
tagcaagtaacaccctaaaaggctaaaacagttcatgtgacagttatgttagttttctttcactccaagaaactcttttaccgtcatcttcacttgcaac |
3451192 |
T |
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| Q |
218 |
tgcaactgcaa |
228 |
Q |
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| T |
3451193 |
tgcaactgcaa |
3451203 |
T |
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