View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751_low_4 (Length: 608)
Name: NF5751_low_4
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_low_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 9 - 608
Target Start/End: Original strand, 3086806 - 3087407
Alignment:
| Q |
9 |
agcagaacctgtgctcatttcttttatgtgttgcccaatttaagcaagtgtggtctaagaagcaaaaactaatgctcctaataccagccatttt-tcaac |
107 |
Q |
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| T |
3086806 |
agcataacctgtgctcatttcttttatgtgttgcccaatttaagcaagtgtggtctaagaagcaaaaactaatgctcctaataccagccattttttcaac |
3086905 |
T |
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| Q |
108 |
tacaattgcatcacctagtcgtggaaatcgtgaccttgagaccacaaatatgttgcttccaagttgcatttgcatgtataggtaacagtgtaccataagc |
207 |
Q |
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| T |
3086906 |
tacaattgcatcacctagtcgtggaaatcgtgacctggagaccacaaacatgttgcttgcaagttgcatttgcatgtataggtaacagtgtaccataagc |
3087005 |
T |
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| Q |
208 |
aaagaactcaaattttgtttccttttactcaacaactaattgacaacagtgtttcacatgacttcattatatcattatcatgtctttgctgattgctacc |
307 |
Q |
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| T |
3087006 |
aaagaactcaaattttgtttccttttactcaacaactaattgacaacagtgtttcacatgacttcattatatcattatcatgtctttgctgattgctacc |
3087105 |
T |
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| Q |
308 |
ttgtatataccagaatatgccatcttaatgttagttaaggtcaactaaactttgaagttaacttaaacacattggtatttcaatcttgtactcaacattc |
407 |
Q |
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| T |
3087106 |
ttgtatataccagaatatgccatcttaatgttagttaaggtcaactaaactttgaagttaacttaaacacattggtatttcaatcttgtactcaacattc |
3087205 |
T |
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| Q |
408 |
atcaatgccccttaacgtgttctttcaccctaa-ttttgttataattgcctctataaatgttacgtacccttcacaaggaaacaaaattaaaacatatag |
506 |
Q |
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| T |
3087206 |
aacaatgccccttaacgtgttctttcaacctaatttttgttataattgcctctataaatgttacgtacccttcacaaggaaacaaaattaaaacatatag |
3087305 |
T |
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| Q |
507 |
tgtgattgaaaaatattagatatggcgagattgaaaggtttgatgttgtctcttccatttggatttgtgttgttcttgtgttctactttcagcatagtac |
606 |
Q |
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| T |
3087306 |
tgtgattgaaaaatattagatatggcgagattgaaaggtttgatgttgtctcttccatttggatttgtgttgtttttgtgttctactttcagcatagtac |
3087405 |
T |
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| Q |
607 |
ct |
608 |
Q |
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| T |
3087406 |
ct |
3087407 |
T |
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