View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751_low_40 (Length: 254)
Name: NF5751_low_40
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_low_40 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 37724623 - 37724849
Alignment:
| Q |
10 |
aataaaattgcaagtagagaatattatataaagtgcaattcgaaatattactgcaagtttaattatttttcttaaactctataattcgatcttgaaccaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
37724623 |
aataaaattgcaagtagagaatattatataaagtacaattcgaaatattactgcaagtttaattatttttcttaaactctataatttgatcttaaaccaa |
37724722 |
T |
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| Q |
110 |
gtctcgaacatgattcatcaaaaatgaagaaagtatattcaaattttaggataagttcaagtttaactggtctgtgataattatcgtgatggagggctat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37724723 |
gtctcgaacatgattcatcaaaaatgaagaaagtatattcaaattttaggataaattcaagtttaactggtctgtgataattatcgtgatggagggctat |
37724822 |
T |
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| Q |
210 |
gttttcaccttcgtaatgattgaaatc |
236 |
Q |
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||||||||||||||||||||||||||| |
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| T |
37724823 |
gttttcaccttcgtaatgattgaaatc |
37724849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 156
Target Start/End: Complemental strand, 4346338 - 4346251
Alignment:
| Q |
69 |
taattatttttcttaaactctataattcgatcttgaaccaagtctcgaacatgattcatcaaaaatgaagaaagtatattcaaatttt |
156 |
Q |
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|||| |||||| || |||||||||||| ||||| ||||| ||| |||||||||||||||| |||||| ||| |||||| ||||||| |
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| T |
4346338 |
taatgatttttgttgaactctataatttgatctcgaaccgagtttcgaacatgattcatctcaaatgaggaacctatatttaaatttt |
4346251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 216
Target Start/End: Original strand, 22702845 - 22702991
Alignment:
| Q |
69 |
taattatttttcttaaactctataattcgatcttgaaccaagtctcgaacatgattcatcaaaaatgaagaaagtatattcaaattttaggataagttca |
168 |
Q |
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|||||||||||||| |||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |||| |||||| ||||||| ||||| |||| |
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| T |
22702845 |
taattatttttcttgaactctataatttgatctcgaaccgagtctcgaacatgattcatcttaaatgcagaagctatatttaaattttgagataaattca |
22702944 |
T |
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| Q |
169 |
agtttaactggtctgtgataattatcgtgatggagggctatgttttca |
216 |
Q |
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| ||||||||||| |||||| |||| ||| |||| ||||| |||| |
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| T |
22702945 |
a-attaactggtctacgataatcatcgcgatcaagggttatgtcttca |
22702991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 216
Target Start/End: Complemental strand, 22991272 - 22991126
Alignment:
| Q |
69 |
taattatttttcttaaactctataattcgatcttgaaccaagtctcgaacatgattcatcaaaaatgaagaaagtatattcaaattttaggataagttca |
168 |
Q |
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|||||||||||||| |||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |||| |||||| ||||||| ||||| |||| |
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| T |
22991272 |
taattatttttcttgaactctataatttgatctcgaaccgagtctcgaacatgattcatcttaaatgcagaagctatatttaaattttgagataaattca |
22991173 |
T |
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| Q |
169 |
agtttaactggtctgtgataattatcgtgatggagggctatgttttca |
216 |
Q |
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| ||||||||||| |||||| |||| ||| |||| ||||| |||| |
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| T |
22991172 |
a-attaactggtctacgataatcatcgcgatcaagggttatgtcttca |
22991126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 28948201 - 28948288
Alignment:
| Q |
69 |
taattatttttcttaaactctataattcgatcttgaaccaagtctcgaacatgattcatcaaaaatgaagaaagtatattcaaatttt |
156 |
Q |
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|||||||||||| | |||||||||||| ||||| ||||| |||||||||||| ||||||| | |||||||| |||||| ||||||| |
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| T |
28948201 |
taattatttttcctgaactctataatttgatctcgaaccgagtctcgaacattattcatcttagatgaagaagttatatttaaatttt |
28948288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 216
Target Start/End: Original strand, 199817 - 199963
Alignment:
| Q |
69 |
taattatttttcttaaactctataattcgatcttgaaccaagtctcgaacatgattcatcaaaaatgaagaaagtatattcaaattttaggataagttca |
168 |
Q |
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|||||||||||| | |||||||||||| ||||| ||||| |||||||||||||||||||| | |||||||| |||||| ||||||| ||||| | || |
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| T |
199817 |
taattatttttcctgaactctataatttgatctcgaaccgagtctcgaacatgattcatcttagatgaagaagctatatttaaattttgagataaatcca |
199916 |
T |
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| Q |
169 |
agtttaactggtctgtgataattatcgtgatggagggctatgttttca |
216 |
Q |
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| ||||||||||| |||||| |||||||| |||| ||||| |||| |
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| T |
199917 |
a-attaactggtctacgataatcatcgtgatcaagggttatgtcttca |
199963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 19648543 - 19648484
Alignment:
| Q |
69 |
taattatttttcttaaactctataattcgatcttgaaccaagtctcgaacatgattcatc |
128 |
Q |
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|||| |||||| || |||||||||||| ||||| ||||| ||| |||||||||||||||| |
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| T |
19648543 |
taatgatttttgttgaactctataatttgatctcgaaccgagtttcgaacatgattcatc |
19648484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 37267363 - 37267327
Alignment:
| Q |
12 |
taaaattgcaagtagagaatattatataaagtgcaat |
48 |
Q |
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||||||| |||||||||||||| |||||||||||||| |
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| T |
37267363 |
taaaattacaagtagagaatataatataaagtgcaat |
37267327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 7012002 - 7011943
Alignment:
| Q |
69 |
taattatttttcttaaactctataattcgatcttgaaccaagtctcgaacatgattcatc |
128 |
Q |
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|||| |||||| || |||||||||||| ||||| ||||| ||| |||||||||||||||| |
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|
| T |
7012002 |
taatgatttttgttgaactctataatttgatctcgaaccgagtttcgaacatgattcatc |
7011943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 23360708 - 23360767
Alignment:
| Q |
69 |
taattatttttcttaaactctataattcgatcttgaaccaagtctcgaacatgattcatc |
128 |
Q |
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|||| ||||||||| ||| |||||||| ||||| ||||| ||| |||||||||||||||| |
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| T |
23360708 |
taatgatttttcttgaacactataatttgatctcgaaccgagtttcgaacatgattcatc |
23360767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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