View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751_low_44 (Length: 244)
Name: NF5751_low_44
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 51 - 224
Target Start/End: Original strand, 34570678 - 34570851
Alignment:
| Q |
51 |
tgaccagcaaagaaaaatagctccacattccaaaatttaaagtactaccaattctgaatattaatttgttagctccataatggcagcaacaatgtgtccg |
150 |
Q |
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| T |
34570678 |
tgaccagcaaagaaaaatagctccacattccaaaatctaaagtactaccaattctgatcattaatttgttagctccataatggcagcaacaatgtctcca |
34570777 |
T |
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| Q |
151 |
ttggcagcattgagagctttaacagctcttgatcttggcacaccatcttgagtcaccaccaactcaatatcctt |
224 |
Q |
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| T |
34570778 |
ttggcagctttgagagctttaacagctcttgatcttggcacaccagcttgagtcaccaccaactcaatatcctt |
34570851 |
T |
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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34296398 - 34296439
Alignment:
| Q |
1 |
aggtaaagattggcaaagcaccatttcaaaccgaacaagagc |
42 |
Q |
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| T |
34296398 |
aggtaaagattggcaaagcaccatttcaaaccgaacaagagc |
34296439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 15887572 - 15887639
Alignment:
| Q |
89 |
aaagtactaccaattctgaatattaatttgttagctccataatggcagcaacaatgtgtccgttggca |
156 |
Q |
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| T |
15887572 |
aaagtactaccaattctgaccattagttagttagctctataatgctagcaacaatgtctccattggca |
15887639 |
T |
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