View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5751_low_47 (Length: 238)

Name: NF5751_low_47
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5751_low_47
NF5751_low_47
[»] chr7 (8 HSPs)
chr7 (16-238)||(4195892-4196114)
chr7 (16-238)||(4233638-4233860)
chr7 (16-225)||(4189013-4189222)
chr7 (27-235)||(4241429-4241637)
chr7 (16-181)||(4095113-4095278)
chr7 (16-238)||(4250669-4250891)
chr7 (16-189)||(4192189-4192362)
chr7 (104-184)||(4102642-4102722)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 4196114 - 4195892
Alignment:
Q  16 acatgattgaggattttccatctagaatagcatggtgagtgcttattccaatggaaaaaccactttccggaaaaaaggttatctgaattgaaataataga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4196114 acatgattgaggattttccatctagaatagcatggtgagtgcttattccaatggaaaaaccactttccggaaaaaaggttatctgaattgagataataga 4196015  T
Q  116 agcaaaagaatctgttgattccaaatgtggtataaaagagcgagacaaagaagcttcatggggtgatttttcaatagcatgattgaaatctaaatcagac 215  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4196014 agcaaaagaatcagttgattccaaatgtggtataaaagagcgagacaaagaagcttcatggggtgatttttcaatagcatgattgaaatctaaatcagac 4195915  T
Q  216 tctgcaatgataaaggaaactcc 238  Q
    |||||||||||||||||||||||    
T  4195914 tctgcaatgataaaggaaactcc 4195892  T

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Target: chr7; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 4233860 - 4233638
Alignment:
Q  16 acatgattgaggattttccatctagaatagcatggtgagtgcttattccaatggaaaaaccactttccggaaaaaaggttatctgaattgaaataataga 115  Q
    ||||| |||||||||||||||| |||  |||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||    
T  4233860 acatggttgaggattttccatcaagagcagcatgatgagtgcttattccaatggaaaaaccactttctggaaaaagggttatctgaactgagataataga 4233761  T
Q  116 agcaaaagaatctgttgattccaaatgtggtataaaagagcgagacaaagaagcttcatggggtgatttttcaatagcatgattgaaatctaaatcagac 215  Q
    ||||||||||| ||| ||||| |||||||||| |||| | |||||||||||||| || |||||||| ||||||||  ||||||||||||||| ||| |||    
T  4233760 agcaaaagaatttgtcgattctaaatgtggtacaaaacaacgagacaaagaagcatcgtggggtgaattttcaatgacatgattgaaatctacatcggac 4233661  T
Q  216 tctgcaatgataaaggaaactcc 238  Q
    ||||||||||| |||||||||||    
T  4233660 tctgcaatgatcaaggaaactcc 4233638  T

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Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 4189222 - 4189013
Alignment:
Q  16 acatgattgaggattttccatctagaatagcatggtgagtgcttattccaatggaaaaaccactttccggaaaaaaggttatctgaattgaaataataga 115  Q
    ||||| |||| ||||||||||| |||  ||||||||| ||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  4189222 acatggttgatgattttccatcaagaccagcatggtgtgtgcttattccaatggaaaaaccactttttggaaaaagggttatctgaattgaaataataga 4189123  T
Q  116 agcaaaagaatctgttgattccaaatgtggtataaaagagcgagacaaagaagcttcatggggtgatttttcaatagcatgattgaaatctaaatcagac 215  Q
    |||| | ||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||| ||||||||  ||||| ||||||||  |||||||    
T  4189122 agcagatgaatctgttgattccaaatgtggtagaaaagaacgagacaaagaagcttcatgaggtgagttttcaatcacatgactgaaatctgcatcagac 4189023  T
Q  216 tctgcaatga 225  Q
    ||||||||||    
T  4189022 tctgcaatga 4189013  T

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Target: chr7; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 27 - 235
Target Start/End: Complemental strand, 4241637 - 4241429
Alignment:
Q  27 gattttccatctagaatagcatggtgagtgcttattccaatggaaaaaccactttccggaaaaaaggttatctgaattgaaataatagaagcaaaagaat 126  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||||||||| ||  |||||||  ||||| || | ||| |||||||||||||||||||    
T  4241637 gattttccatcaagaacagcatgatgagtgcttattccaatggaaaaaccacgttttggaaaaagagttatttggagtgagataatagaagcaaaagaat 4241538  T
Q  127 ctgttgattccaaatgtggtataaaagagcgagacaaagaagcttcatggggtgatttttcaatagcatgattgaaatctaaatcagactctgcaatgat 226  Q
     |||||||| |||||||||||||||||| ||||||||| ||||||| |  ||||| ||||||||  |||||||||||||||||||||||||||||||||     
T  4241537 ttgttgatttcaaatgtggtataaaagaacgagacaaataagcttcttttggtgagttttcaatgacatgattgaaatctaaatcagactctgcaatgag 4241438  T
Q  227 aaaggaaac 235  Q
     ||||||||    
T  4241437 caaggaaac 4241429  T

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Target: chr7; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 4095278 - 4095113
Alignment:
Q  16 acatgattgaggattttccatctagaatagcatggtgagtgcttattccaatggaaaaaccactttccggaaaaaaggttatctgaattgaaataataga 115  Q
    ||||| |||| ||||||||||| |||| ||||||||| |||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||    
T  4095278 acatggttgaagattttccatcaagaacagcatggtgtgtgcttattccaatggaaaaaccatttttcggaaaaagggttatctgaattgaaataataga 4095179  T
Q  116 agcaaaagaatctgttgattccaaatgtggtataaaagagcgagacaaagaagcttcatggggtga 181  Q
    |||||||||||||| |||||| || || |||| |||||| ||||||||||||||||| || |||||    
T  4095178 agcaaaagaatctgatgattctaagtgaggtacaaaagaacgagacaaagaagcttcttgtggtga 4095113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 4250891 - 4250669
Alignment:
Q  16 acatgattgaggattttccatctagaatagcatggtgagtgcttattccaatggaaaaaccactttccggaaaaaaggttatctgaattgaaataataga 115  Q
    ||||| |||| ||||||||||| |||| |||||| |||||||| ||||| |||  ||||||||| |  || |||| ||| || || | ||| ||||||||    
T  4250891 acatggttgaagattttccatcaagaacagcatgatgagtgctgattccgatgctaaaaccactatttgggaaaagggtgatttggagtgacataataga 4250792  T
Q  116 agcaaaagaatctgttgattccaaatgtggtataaaagagcgagacaaagaagcttcatggggtgatttttcaatagcatgattgaaatctaaatcagac 215  Q
    |||||||||||||| |||||| || || ||||||||||| |||||||||||||||||||||||||| |||||||   |||||||||||||| |||||||     
T  4250791 agcaaaagaatctgatgattctaagtggggtataaaagaacgagacaaagaagcttcatggggtgagttttcaacgacatgattgaaatctgaatcagat 4250692  T
Q  216 tctgcaatgataaaggaaactcc 238  Q
    ||||||||||| || ||||||||    
T  4250691 tctgcaatgatcaacgaaactcc 4250669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 4192362 - 4192189
Alignment:
Q  16 acatgattgaggattttccatctagaatagcatggtgagtgcttattccaatggaaaaaccactttccggaaaaaaggttatctgaattgaaataataga 115  Q
    ||||| |||| ||||||||||| |||| | ||||||| |||||  ||| |||||||||||||||||   |||||| ||||||||||| ||||||||||||    
T  4192362 acatggttgaagattttccatcaagaacaccatggtgtgtgctagttctaatggaaaaaccacttttttgaaaaagggttatctgaactgaaataataga 4192263  T
Q  116 agcaaaagaatctgttgattccaaatgtggtataaaagagcgagacaaagaagcttcatggggtgatttttcaa 189  Q
    ||||||||||||||  ||||||||||| ||||||||||| ||||||||||||||||||| |||||| |||||||    
T  4192262 agcaaaagaatctgcggattccaaatgcggtataaaagaacgagacaaagaagcttcatcgggtgagttttcaa 4192189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 4102722 - 4102642
Alignment:
Q  104 tgaaataatagaagcaaaagaatctgttgattccaaatgtggtataaaagagcgagacaaagaagcttcatggggtgattt 184  Q
    ||||||||| ||||||||||||||||||||||| || || |||| ||| || ||||||||||||||||| || ||||||||    
T  4102722 tgaaataatggaagcaaaagaatctgttgattctaagtgaggtacaaacgaacgagacaaagaagcttcttgtggtgattt 4102642  T

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