View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751_low_48 (Length: 236)
Name: NF5751_low_48
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 45514449 - 45514247
Alignment:
| Q |
16 |
attctacaaaaactgtgaaatatacggcactgtcgacttcatctacggcaacgctgccgctgtatttcaagactgcatggtttatgcacgctatagacag |
115 |
Q |
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| T |
45514449 |
attctacaaaaactgtgaaatatacggcactgtcgacttcatctacggcaacgctgccgctgtatttcaagactgcatggtttatgcacgctatagacag |
45514350 |
T |
|
| Q |
116 |
tttgtgacattcaccgcacagtcacgtgaaagtccatatgaaaaaacaggtttcacattccaacgttgtaaattcacaatgtcacctgaagatgagaaga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45514349 |
tttgtgacattcaccgcacagtcacgtgaaagtccatatgaaaaaacaggtttcacattccaacgttgtaaattcacaatgtcacctgaagatgagaaga |
45514250 |
T |
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| Q |
216 |
gaa |
218 |
Q |
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||| |
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| T |
45514249 |
gaa |
45514247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 43699647 - 43699453
Alignment:
| Q |
16 |
attctacaaaaactgtgaaatatacggcactgtcgacttcatctacggcaacgctgccgctgtatttcaagactgcatggtttatgcacgctatagacag |
115 |
Q |
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|||||||||||||||||||||||| || || ||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
43699647 |
attctacaaaaactgtgaaatatatggtaccgtcgacttcatcttcggcaacgctgcagctgtatttcaagactgtatggtttatgcacgctatcgacag |
43699548 |
T |
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| Q |
116 |
tttgtgacattcaccgcacagtcacgtgaaagtccatatgaaaaaacaggtttcacattccaacgttgtaaattcacaatgtcacctgaagatga |
210 |
Q |
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| T |
43699547 |
ttcgtggtattcaccgcacaatcacgtggaaatccatctgaaaaaacaggtttcacattccaacattgtaatttcaccatgtcacctgaagatga |
43699453 |
T |
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