View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751_low_5 (Length: 606)
Name: NF5751_low_5
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 363 - 594
Target Start/End: Original strand, 3608799 - 3609030
Alignment:
| Q |
363 |
tgattctaaacaatgcaatcaagatccaagattatattttcaccccctaatttttcttcacttttaagtgatttagttatgtgactttgttgatccatct |
462 |
Q |
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| T |
3608799 |
tgattctaaacaatgcaatcaagatccaagattatattttcaccccctaaattttcttcacttttaagtgatttagttatgtgactttgttgatccatct |
3608898 |
T |
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| Q |
463 |
tattcattgtttttaagagtatcatccatgtttcaatatgctttgcacaatcaatattttaaagaactttgtaaacagcttgtcgagagagatctaactt |
562 |
Q |
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| T |
3608899 |
tactcattgtttttaagagtatcatccatgtttcaatatgctttgcacaatcaatattttaaagaactttgtaaacagtttgtcgagagaggtctaactt |
3608998 |
T |
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| Q |
563 |
actacatggtcgagttgtgctattctgagaat |
594 |
Q |
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| T |
3608999 |
actacatggtcgagttgtgctattctgagaat |
3609030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 180 - 296
Target Start/End: Original strand, 3608616 - 3608732
Alignment:
| Q |
180 |
actatattagactttctcattagtaggtcataaaatttgacttcgagttaactaacaaagattgatatgaaatataggcaacaagtgtggtgaatgtaca |
279 |
Q |
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| T |
3608616 |
actatattagactttctccttagtaggtcataaaatttgacttcgagttaactaacaaagattgatatgaaatataggcaataagtgtggtgaatgtaca |
3608715 |
T |
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| Q |
280 |
aaaatacaaaggtgcgc |
296 |
Q |
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| T |
3608716 |
aaaatacaaaggtgcgc |
3608732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 3608378 - 3608473
Alignment:
| Q |
15 |
catattttcatcagctttaaatgattttgcgattgaagctagcgggg-caaggggtattccatttgtttacttgatagggagcaattcttacctag |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3608378 |
catattttcatcagctttaaatgattttgcgattgaagctagcgggggcaaggggtattccatttgtttacttgatagggagcaattcttacctag |
3608473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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