View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5751_low_53 (Length: 218)
Name: NF5751_low_53
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5751_low_53 |
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| [»] scaffold1089 (1 HSPs) |
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| [»] scaffold1377 (1 HSPs) |
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Alignment Details
Target: scaffold1089 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: scaffold1089
Description:
Target: scaffold1089; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 534 - 718
Alignment:
| Q |
18 |
gagaaatccttggacaagaggacaattcttctataatttcactcctttctaaaagcatttcatttgaggagcgagtagtaacgtcgattgtcatatcttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
534 |
gagaaatccttggacaagaggacaattcttctataatttcactcctttctaaaagcatttcatttgaggagcgagtagtaacgtcgattgtcatatcttg |
633 |
T |
|
| Q |
118 |
taaaagcctagcattctgcagaatatatgttgcaaatcgaaggttatttgccgatccttcaaagtttaaaattgtacatgatctg |
202 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
634 |
taaaaacctagcattctgcagaatatatgttgcaaatagaaggttattagccgatccttcaaagtttaaaattgtacatgatctg |
718 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 5e-52; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 14435502 - 14435692
Alignment:
| Q |
18 |
gagaaatccttggacaagaggacaattcttctataatttcactcctttctaaaagcatttcatttgaggagcgagtagtaacgtcgat------tgtcat |
111 |
Q |
| |
|
|||| |||||||||||||| || |||||||||||||||| ||||||||| |||| |||| ||||| |||||| |||||||||||| || |||||| |
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| T |
14435502 |
gagatatccttggacaagaagataattcttctataatttgactcctttccaaaatcattccattttaggagctagtagtaacgtcaatgtcaattgtcat |
14435601 |
T |
|
| Q |
112 |
atcttgtaaaagcctagcattctgcagaatatatgttgcaaatcgaaggttatttgccgatccttcaaagtttaaaattgtacatgatctg |
202 |
Q |
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||||||||||||||| |||||||||| |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14435602 |
atcttgtaaaagcctcgcattctgcaatatatattttgcaaattgaaggtcatttgccgatccttcaaagtttaaaattgtacatgatctg |
14435692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 14438167 - 14438351
Alignment:
| Q |
18 |
gagaaatccttggacaagaggacaattcttctataatttcactcctttctaaaagcatttcatttgaggagcgagtagtaacgtcgattgtcatatcttg |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| | ||||||| |||||| | |||||||||||||||||| |
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| T |
14438167 |
gagaaatccttggacaagaggataattcttctataatttgactccttttcaaaagcatgtttattgaggacttagtagttaagtcgattgtcatatcttg |
14438266 |
T |
|
| Q |
118 |
taaaagcctagcattctgcagaatatatgttgcaaatcgaaggttatttgccgatccttcaaagtttaaaattgtacatgatctg |
202 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||| ||| || | | | ||||||||||||||||||||||| |||||| |
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| T |
14438267 |
taaaagcctcgcattctgcaaaatatatgatgcaaatctaagattcctagagaagccttcaaagtttaaaattgtacaggatctg |
14438351 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 3254849 - 3254980
Alignment:
| Q |
68 |
aaaagcatttcatttgaggagcgagtagtaacgtcgattgtcatatcttgtaaaagcctagcattctgcagaatatatgttgcaaatcgaaggttatttg |
167 |
Q |
| |
|
||||||||| || |||||||| | ||| |||| ||||| |||| ||||||||||| || |||||||||| ||||||| |||||||| |||| | ||||| |
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|
| T |
3254849 |
aaaagcattctatctgaggagccaatagcaacgccgattctcatgtcttgtaaaagactcgcattctgcaaaatatattttgcaaattgaagatcatttg |
3254948 |
T |
|
| Q |
168 |
ccgatccttcaaagtttaaaattgtacatgat |
199 |
Q |
| |
|
|||| | |||| ||||||||| ||||||||| |
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|
| T |
3254949 |
ccgaggcatcaaggtttaaaatggtacatgat |
3254980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 91 - 201
Target Start/End: Complemental strand, 7872369 - 7872259
Alignment:
| Q |
91 |
agtagtaacgtcgattgtcatatcttgtaaaagcctagcattctgcagaatatatgttgcaaatcgaaggttatttgccgatccttcaaagtttaaaatt |
190 |
Q |
| |
|
|||||||||| ||||| |||| |||| |||||| | |||||||||| ||||||||||||||||||||| | |||||| || || | ||||||||||| |
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| T |
7872369 |
agtagtaacgccgattttcatgtcttctaaaagacctgcattctgcaaaatatatgttgcaaatcgaagatcatttgctgagccatggaagtttaaaata |
7872270 |
T |
|
| Q |
191 |
gtacatgatct |
201 |
Q |
| |
|
||||||||||| |
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|
| T |
7872269 |
gtacatgatct |
7872259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 7819962 - 7820060
Alignment:
| Q |
104 |
attgtcatatcttgtaaaagcctagcattctgcagaatatatgttgcaaatcgaaggttatttgccgatccttcaaagtttaaaattgtacatgatctg |
202 |
Q |
| |
|
|||||||| ||||||||||| ||||||| | || |||| ||||||||||||| | |||| |||| ||||||||||||||||| |||||||||||| |
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|
| T |
7819962 |
attgtcatttcttgtaaaagatacgcattctttaaaacatattttgcaaatcgaagatcattttccgagccttcaaagtttaaaatagtacatgatctg |
7820060 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 199
Target Start/End: Complemental strand, 7818459 - 7818355
Alignment:
| Q |
95 |
gtaacgtcgattgtcatatcttgtaaaagcctagcattctgcagaatatatgttgcaaatcgaaggttatttgccgatccttcaaagtttaaaattgtac |
194 |
Q |
| |
|
|||||| ||||| |||| ||| |||||||||| |||||| || ||||||||||| ||||||||| | |||| | | |||| |||||||||||| |||| |
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|
| T |
7818459 |
gtaacgccgattttcatgtctcgtaaaagcctcacattcttcaaaatatatgttgtaaatcgaagataatttatcaagccttgaaagtttaaaatagtac |
7818360 |
T |
|
| Q |
195 |
atgat |
199 |
Q |
| |
|
||||| |
|
|
| T |
7818359 |
atgat |
7818355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 7815496 - 7815422
Alignment:
| Q |
128 |
gcattctgcagaatatatgttgcaaatcgaaggttatttgccgatccttcaaagtttaaaattgtacatgatctg |
202 |
Q |
| |
|
|||||||||| ||||||| ||| ||||||||| | |||| |||| |||| ||||||||||| |||||||||||| |
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|
| T |
7815496 |
gcattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctg |
7815422 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 7805795 - 7805858
Alignment:
| Q |
139 |
aatatatgttgcaaatcgaaggttatttgccgatccttcaaagtttaaaattgtacatgatctg |
202 |
Q |
| |
|
||||||| ||||||||||||| | ||| |||| || |||||||||||||| |||||||||||| |
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|
| T |
7805795 |
aatatattttgcaaatcgaagatcattatccgagccgtcaaagtttaaaatagtacatgatctg |
7805858 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 2467439 - 2467620
Alignment:
| Q |
18 |
gagaaatccttggacaagaggacaattcttctataatttcactcctttctaaaagcatttcatttgaggagcgagtagtaacgtcgattgtcatatcttg |
117 |
Q |
| |
|
|||| ||| ||||||||||||| |||||||| || |||| |||| |||| |||||| || |||||||||||| ||| ||||||||||||||||| | ||| |
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|
| T |
2467439 |
gagagatcgttggacaagaggataattcttcaattatttgactcttttccaaaagctttccatttgaggagctagttgtaacgtcgattgtcatgttttg |
2467538 |
T |
|
| Q |
118 |
taaaagcctagcattctgcagaatatatgttgcaaatcgaaggttatttgccgatccttcaaagtttaaaattgtacatgat |
199 |
Q |
| |
|
||||| || ||||||||| |||||||||||||||||||| | |||||| || |||||||| |||||||||||||||||| |
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|
| T |
2467539 |
taaaattctcccattctgcaatatatatgttgcaaatcgaagatcatttgcagacccttcaaaatttaaaattgtacatgat |
2467620 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1377 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold1377
Description:
Target: scaffold1377; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 1331 - 1442
Alignment:
| Q |
91 |
agtagtaacgtcgattgtcatatcttgtaaaagcctagcattctgcagaatatatgttgcaaatcgaaggttatttgccgatccttcaaagtttaaaatt |
190 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |
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|
| T |
1331 |
agtagttaggtcgattgtcatatcttgtaaaagcctcgcattctgcaaaatatatgttgcaaatcgaagattattggccgagccttcaaagtttaaaatt |
1430 |
T |
|
| Q |
191 |
gtacatgatctg |
202 |
Q |
| |
|
||||| |||||| |
|
|
| T |
1431 |
gtacaggatctg |
1442 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 28720023 - 28720149
Alignment:
| Q |
72 |
gcatttcatttgaggagcgagtagtaacgtcgattgtcatatcttgtaaaagcctagcattctgcagaatatatgttgcaaatcgaaggttatttgccga |
171 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||||||| ||||||||||| || ||||||||||||||||| |||||||||| || | |||| |||| |
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|
| T |
28720023 |
gcatttcatttgaggagctagtagtaacctcaattgtcatttcttgtaaaagtctcgcattctgcagaatatactttgcaaatcggagatcattttccga |
28720122 |
T |
|
| Q |
172 |
tccttcaaagtttaaaattgtacatga |
198 |
Q |
| |
|
|||||||| |||||||| |||||||| |
|
|
| T |
28720123 |
gccttcaaaatttaaaatagtacatga |
28720149 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 37996581 - 37996688
Alignment:
| Q |
94 |
agtaacgtcgattgtcatatcttgtaaaagcctagcattctgcagaatatatgttgcaaatcgaaggttatttgccgatccttcaaagtttaaaattgta |
193 |
Q |
| |
|
|||||| |||||| |||| ||||||||||| || ||||| |||| ||||||| ||||||||||||| | || ||||| ||||||||||||||||| ||| |
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|
| T |
37996581 |
agtaacttcgattctcatgtcttgtaaaagacttgcattatgcaaaatatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagta |
37996680 |
T |
|
| Q |
194 |
catgatct |
201 |
Q |
| |
|
|||||||| |
|
|
| T |
37996681 |
catgatct |
37996688 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 14308659 - 14308548
Alignment:
| Q |
91 |
agtagtaacgtcgattgtcatatcttgtaaaagcctagcattctgcagaatatatgttgcaaatcgaaggttatttgccgatccttcaaagtttaaaatt |
190 |
Q |
| |
|
|||||||| || ||||||||| ||||| ||| | || || ||||||| ||||||||||||||||||||| | |||| | | | || |||||||||||| |
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|
| T |
14308659 |
agtagtaatgttgattgtcatgtcttgcaaacgtcttgcgttctgcaaaatatatgttgcaaatcgaagatcatttccatagcattgaaagtttaaaata |
14308560 |
T |
|
| Q |
191 |
gtacatgatctg |
202 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14308559 |
gtacatgatctg |
14308548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 17392741 - 17392690
Alignment:
| Q |
107 |
gtcatatcttgtaaaagcctagcattctgcagaatatatgttgcaaatcgaa |
158 |
Q |
| |
|
|||||| |||||||||| || |||||||||| |||||||||||| ||||||| |
|
|
| T |
17392741 |
gtcataacttgtaaaagtctcgcattctgcaaaatatatgttgcgaatcgaa |
17392690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 14018776 - 14018677
Alignment:
| Q |
102 |
cgattgtcatatcttgtaaaagcctagcattctgcagaatatatgttgcaaatcgaaggttatttgccgatccttcaaagtttaaaattgtacatgatct |
201 |
Q |
| |
|
||||| |||| |||||||||| | |||||||||| ||| ||| ||||||||||||| | ||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
14018776 |
cgattttcatgtcttgtaaaatacgggcattctgcaaaatgtattttgcaaatcgaagatcatttgccgagttatcaaagtttaaaatagtacatgatct |
14018677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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