View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5751_low_9 (Length: 491)

Name: NF5751_low_9
Description: NF5751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5751_low_9
NF5751_low_9
[»] chr3 (8 HSPs)
chr3 (293-467)||(49819536-49819710)
chr3 (3-113)||(49820687-49820797)
chr3 (305-375)||(18345459-18345528)
chr3 (179-228)||(18345327-18345376)
chr3 (393-459)||(49819450-49819516)
chr3 (198-228)||(49819775-49819805)
chr3 (422-467)||(18345543-18345588)
chr3 (410-466)||(18345616-18345672)
[»] chr1 (3 HSPs)
chr1 (294-375)||(30212372-30212452)
chr1 (179-228)||(30212524-30212573)
chr1 (410-467)||(30212312-30212369)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 4e-82; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 293 - 467
Target Start/End: Complemental strand, 49819710 - 49819536
Alignment:
Q  293 ggttctctaacattaattttttcagtgtgatgacaatgttaaagtgaggcatgagaagagtagttgaaccaaaagtgtactttcagttaagtgatgtcat 392  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49819710 ggttctctaacattaattttttcaatgtgatgacaatgttaaagtgaggcatgagaagagtagttgaaccaaaagtgtactttcagttaagtgatgtcat 49819611  T
Q  393 catattaagaatgtaagaaaaaaggccaaatttaccctcaaatttgagacgtttgtattaaaaagggataagggc 467  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  49819610 catattaggaatgtaagataaaagaccaaatttaccctcaaatttgagacgtttgcattaaaaagggataagggc 49819536  T

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Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 49820797 - 49820687
Alignment:
Q  3 gaaggacataaataaaatgaagacaattttacaaaggaaaaagagttcaccttacccatgtttttcctttatgggccttcttcgtcaatgaaaaaagtga 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  49820797 gaaggacataaataaaatgaagacaattttacaaaggaaaaagagttcaccttacccatgttcttcctttatgggccttcttcgtcaatgaaaaaagtga 49820698  T
Q  103 acatctcctgc 113  Q
    |||||||||||    
T  49820697 acatctcctgc 49820687  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 305 - 375
Target Start/End: Original strand, 18345459 - 18345528
Alignment:
Q  305 ttaattttttcagtgtgatgacaatgttaaagtgaggcatgagaagagtagttgaaccaaaagtgtacttt 375  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18345459 ttaactttttcactgtgatgacaatgttaaagtgaggcatgagaagagtagtt-aaccaaaagtgtacttt 18345528  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 18345327 - 18345376
Alignment:
Q  179 ttgtgagattattgaatcttatataaaagtgtgttgagaataaaatgagt 228  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18345327 ttgtgagattattgaattttatataaaagtgtgttgagaataaaatgagt 18345376  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 393 - 459
Target Start/End: Complemental strand, 49819516 - 49819450
Alignment:
Q  393 catattaagaatgtaagaaaaaaggccaaatttaccctcaaatttgagacgtttgtattaaaaaggg 459  Q
    |||||||  ||||||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||    
T  49819516 catattagaaatgtaagaaaaaagaccagatttacccccaaatttgagacgtttgcattaaaaaggg 49819450  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 228
Target Start/End: Complemental strand, 49819805 - 49819775
Alignment:
Q  198 tatataaaagtgtgttgagaataaaatgagt 228  Q
    |||||||||||||||||||||||||||||||    
T  49819805 tatataaaagtgtgttgagaataaaatgagt 49819775  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 467
Target Start/End: Original strand, 18345543 - 18345588
Alignment:
Q  422 atttaccctcaaatttgagacgtttgtattaaaaagggataagggc 467  Q
    ||||||||  |||||||||||||||| |||||||| ||||||||||    
T  18345543 atttaccccaaaatttgagacgtttgcattaaaaaaggataagggc 18345588  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 466
Target Start/End: Original strand, 18345616 - 18345672
Alignment:
Q  410 aaaaaaggccaaatttaccctcaaatttgagacgtttgtattaaaaagggataaggg 466  Q
    ||||||| |||  |||||||  |||||||||| ||||| ||||||||||||||||||    
T  18345616 aaaaaagaccagctttaccccaaaatttgagatgtttgcattaaaaagggataaggg 18345672  T

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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 294 - 375
Target Start/End: Complemental strand, 30212452 - 30212372
Alignment:
Q  294 gttctctaacattaattttttcagtgtgatgacaatgttaaagtgaggcatgagaagagtagttgaaccaaaagtgtacttt 375  Q
    |||||||  |||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30212452 gttctctgtcattaattttttgactgtgatgacaatgttaaagtgaggcatgagaagagtagtt-aaccaaaagtgtacttt 30212372  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 30212573 - 30212524
Alignment:
Q  179 ttgtgagattattgaatcttatataaaagtgtgttgagaataaaatgagt 228  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  30212573 ttgtgagattattgaattttatataaaagtgtgttgagaagaaaatgagt 30212524  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 410 - 467
Target Start/End: Complemental strand, 30212369 - 30212312
Alignment:
Q  410 aaaaaaggccaaatttaccctcaaatttgagacgtttgtattaaaaagggataagggc 467  Q
    ||||||| ||| ||||||||  |||||||||||||||| |||||||| ||||||||||    
T  30212369 aaaaaagaccagatttaccccaaaatttgagacgtttgcattaaaaaaggataagggc 30212312  T

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