View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5752_low_1 (Length: 603)
Name: NF5752_low_1
Description: NF5752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5752_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 11 - 587
Target Start/End: Original strand, 45658825 - 45659402
Alignment:
| Q |
11 |
cacagacagaggcaaacaattttgagctatttcttcacaaacaccatttcatttgaactttactattcttgtctaaaacttaactctcattatcgagaca |
110 |
Q |
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| T |
45658825 |
cacagacagaggcaaacaattttgagctatttcttcacaaacaccatttcatttgaactttactattcttgtctaaaacttaactctcattatcgagaca |
45658924 |
T |
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| Q |
111 |
atggtaaggttctactcattcatctcactcatttttctaaccttagcttgtttctatatacatatagttgatgagtttcaaatctttgtaatacaggcag |
210 |
Q |
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| T |
45658925 |
atggtaaggttctactcattcatctcactcatttttctaaccttagcttgtttctatatacatatagttgatgagtttcaaatctttgtaatacaggcag |
45659024 |
T |
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| Q |
211 |
atcaagaggaaactgaagaactcaagcttctcactgaatggaagagaaagaaaggtggattcagggcttctatgtttatttttggtaagctgaagtataa |
310 |
Q |
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| T |
45659025 |
atcaagaggaaactgaagaactcaagcttctcactgaatggaagagaaagaaaggtggatttagggcttctatgtttatttttggtaagctgaagtataa |
45659124 |
T |
|
| Q |
311 |
acaaaaactctttgttggttctgttttttgctgatttgaa-tttgatgcaaaatatgttcttgttttttgatgtagtattgtcagcattggacaacatgg |
409 |
Q |
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| T |
45659125 |
acaaaaactctttgttggttctgttttttgctgatttgaattttgatgcaaactatgttcttgttttttgatgtagtattgtcagcattggacaacatgg |
45659224 |
T |
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| Q |
410 |
gttttgtggcaaacatggttagcttagttctatatttttatggagtgatgcactttgatataccaagttctgccaatactctcacaaacttcatgggttc |
509 |
Q |
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| T |
45659225 |
gttttgtggcaaacatggttagcttagttctatatttttatggagtgatgcactttgatataccaagttctgcaaatactctcacaaacttcatgggttc |
45659324 |
T |
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| Q |
510 |
aactttcttgctctctcttgttggtggcttcatctcagatacttacttaaatagattcaccacttgcttgctttttgg |
587 |
Q |
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| T |
45659325 |
aactttcttgctttctctagttggtggcttcatctcagatacttacttaaatagattcaccacttgcttgctttttgg |
45659402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 381 - 572
Target Start/End: Complemental strand, 37984345 - 37984154
Alignment:
| Q |
381 |
tgtagtattgtcagcattggacaacatgggttttgtggcaaacatggttagcttagttctatatttttatggagtgatgcactttgatataccaagttct |
480 |
Q |
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|||||| |||||||||||||| ||||||||||||||| |||||||||| |||||||| ||||| ||| ||||||||||||||||||| | |||| ||| |
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| T |
37984345 |
tgtagttttgtcagcattggataacatgggttttgtgacaaacatggtgagcttagtactatactttattggagtgatgcactttgatctttcaagctct |
37984246 |
T |
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| Q |
481 |
gccaatactctcacaaacttcatgggttcaactttcttgctctctcttgttggtggcttcatctcagatacttacttaaatagattcaccac |
572 |
Q |
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| T |
37984245 |
gccaacactttgacaaattttatgggctcaactttcttgctctctcttgttggtgccttcatctcagatacttacctcaacagattcaccac |
37984154 |
T |
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