View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5752_low_2 (Length: 283)
Name: NF5752_low_2
Description: NF5752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5752_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 37058271 - 37058074
Alignment:
| Q |
20 |
ggatccactcctctcttatatcagtcatgtcacatatgtcattttcatgcatgtatctcagtttgacccagtctca--------------ctaaaatgaa |
105 |
Q |
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| T |
37058271 |
ggatccactcctctcttacatcagtcatgtcacatatgtcattttcatgcatgtatctcagtttgacccagtctcagtggttatgcaacactaaaatgaa |
37058172 |
T |
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| Q |
106 |
cgtgccttttcctttcacatgactaaaagaaagacttaattaggaagagtctgtgttaaaacttaaaatgtggttattatcaaataagaaatgcgggg |
203 |
Q |
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| T |
37058171 |
cgtgccttttctttttacacgacataaagaaagacttaattgggaagagtctgtgttaaaacttaaaatgtggttattatcaaataaaaaatgcgggg |
37058074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 37065749 - 37065570
Alignment:
| Q |
20 |
ggatccactcctctcttatatcagtcatgtcacatatgtcattttcatgcatgtatctcagtttgacccagtct--------------cactaaaatgaa |
105 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37065749 |
ggatccactcctctcttacatcagtcatgtcacatatgtcattttcatgcatgtatctcagtttgacccagtctcagtggttatgcaacactaaaatgaa |
37065650 |
T |
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| Q |
106 |
cgtgccttttcctttcacatgactaaaagaaagacttaattaggaagagtctgtgttaaaacttaaaatgtggttattat |
185 |
Q |
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| T |
37065649 |
cgtgccttttctttttacacgacataaagaaagacttaattgggaagagtttgtgttcaaacttaaaatgtggttattat |
37065570 |
T |
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