View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5752_low_4 (Length: 215)

Name: NF5752_low_4
Description: NF5752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5752_low_4
NF5752_low_4
[»] chr6 (29 HSPs)
chr6 (18-214)||(27682187-27682383)
chr6 (36-215)||(27715242-27715421)
chr6 (36-214)||(27695310-27695488)
chr6 (21-212)||(27589855-27590052)
chr6 (21-212)||(27674279-27674476)
chr6 (86-174)||(26146295-26146383)
chr6 (154-214)||(27607829-27607889)
chr6 (18-128)||(27607948-27608046)
chr6 (86-127)||(25486668-25486709)
chr6 (86-125)||(26059223-26059262)
chr6 (86-125)||(26079193-26079232)
chr6 (154-196)||(25514246-25514288)
chr6 (154-196)||(25583088-25583130)
chr6 (152-214)||(27657432-27657494)
chr6 (76-126)||(27657544-27657594)
chr6 (86-127)||(25514161-25514202)
chr6 (76-128)||(26805825-26805877)
chr6 (150-214)||(31287988-31288052)
chr6 (86-121)||(25583014-25583049)
chr6 (154-196)||(25486757-25486799)
chr6 (154-196)||(26059309-26059351)
chr6 (154-196)||(26079279-26079321)
chr6 (154-196)||(25548358-25548400)
chr6 (150-200)||(26626533-26626583)
chr6 (150-200)||(26638814-26638864)
chr6 (150-200)||(26732510-26732560)
chr6 (150-200)||(26744780-26744830)
chr6 (185-214)||(27703614-27703643)
chr6 (154-198)||(28795798-28795842)
[»] scaffold0349 (1 HSPs)
scaffold0349 (36-215)||(16524-16702)
[»] chr8 (2 HSPs)
chr8 (18-128)||(29270668-29270766)
chr8 (154-214)||(29270549-29270609)
[»] chr1 (3 HSPs)
chr1 (68-125)||(265145-265202)
chr1 (150-206)||(265031-265087)
chr1 (77-125)||(26139328-26139376)
[»] chr4 (5 HSPs)
chr4 (76-123)||(18686451-18686498)
chr4 (76-123)||(18696257-18696304)
chr4 (76-125)||(18676409-18676458)
chr4 (155-192)||(18686358-18686395)
chr4 (87-123)||(18652350-18652386)
[»] scaffold0277 (2 HSPs)
scaffold0277 (150-198)||(1415-1463)
scaffold0277 (76-116)||(1524-1564)


Alignment Details
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 27682187 - 27682383
Alignment:
Q  18 aactttgtttcatacctcgaaattgaatgaactcagtaaaacacaatgcaagtataatatggagaaaggacttttgaaaaatgaatggatccatgtggag 117  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  27682187 aactttgtttcatacctcaaaattgaatgaactcattaaaacacaatgcgagtataatatagagaaaggacttttgaaaaatgaatggatctatgtggag 27682286  T
Q  118 tttaagttggaggatcatgagattagtctttatgcacaaatgggaatccacgtgtggaatgagaaaagcaacacggaggaggagaatgtggtattca 214  Q
    ||||||||| |||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27682287 tttaagttgaaggatcatgagaatagtgtttatgcacaaaggggaatccacgtgtggaatgagaaaagcaacacggaggaggagaatgtggtattca 27682383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 36 - 215
Target Start/End: Complemental strand, 27715421 - 27715242
Alignment:
Q  36 gaaattgaatgaactcagtaaaacacaatgcaagtataatatggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagttggaggatcat 135  Q
    ||||||| |||||||  |||||| |||||   ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||     
T  27715421 gaaattgtatgaactaggtaaaagacaatatgagtataatatggacaaaggacttttgaaaagtgaatggatccatgtggagtttaagttgaaggatcac 27715322  T
Q  136 gagattagtctttatgcacaaatgggaatccacgtgtggaatgagaaaagcaacacggaggaggagaatgtggtattcaa 215  Q
    |||| |||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27715321 gagaatagtgtttatacacaaatgggagtccacgtgtggaatgagaaaagcaacacggaggaggagaatgtggtattcaa 27715242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 36 - 214
Target Start/End: Complemental strand, 27695488 - 27695310
Alignment:
Q  36 gaaattgaatgaactcagtaaaacacaatgcaagtataatatggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagttggaggatcat 135  Q
    ||||||| | |||||| |||||  ||||  || |||||||||||| |||||||||||||||| ||||||||||||||||||||||| || | |||||||     
T  27695488 gaaattggaagaactctgtaaaggacaacacatgtataatatggacaaaggacttttgaaaagtgaatggatccatgtggagtttaggtcgaaggatcac 27695389  T
Q  136 gagattagtctttatgcacaaatgggaatccacgtgtggaatgagaaaagcaacacggaggaggagaatgtggtattca 214  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27695388 gagaatagtgtttatgcacaaatgggaatccacgtgtggaatgagaaaagcaacacggaggaggagaatgtggtattca 27695310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 27590052 - 27589855
Alignment:
Q  21 tttgtttcatacctcgaaattgaatgaactcagtaaaacacaatgcaagtataatatggagaaaggacttttgaaaaatgaatggatccatgtggagttt 120  Q
    ||||||||||||| |||||||||||||||||||||||| |||||   ||||||  ||||| ||||||||||||||||||||||||||||||||||| |||    
T  27590052 tttgtttcataccccgaaattgaatgaactcagtaaaagacaatttgagtatataatggacaaaggacttttgaaaaatgaatggatccatgtggaattt 27589953  T
Q  121 aagttggaggatcatgagattagtcttt------atgcacaaatgggaatccacgtgtggaatgagaaaagcaacacggaggaggagaatgtggtatt 212  Q
    |||||| |||||| ||| | ||   | |      |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27589952 aagttgaaggatcgtgacaatataatattcagaaatgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatt 27589855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 27674476 - 27674279
Alignment:
Q  21 tttgtttcatacctcgaaattgaatgaactcagtaaaacacaatgcaagtataatatggagaaaggacttttgaaaaatgaatggatccatgtggagttt 120  Q
    ||||||||||||| ||||||||||||||||| ||||||  ||||   ||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  27674476 tttgtttcataccccgaaattgaatgaactcggtaaaaggcaatttgagtatataatggagaaaggacttttgaaaaatgaatggatccatgtggagttt 27674377  T
Q  121 aagttggaggatcatgagattagtcttt------atgcacaaatgggaatccacgtgtggaatgagaaaagcaacacggaggaggagaatgtggtatt 212  Q
    ||| || |||||| ||| | ||   | |      |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27674376 aaggtgaaggatcgtgacaatataatattcagaaatgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggaggagaatgtggtatt 27674279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 26146295 - 26146383
Alignment:
Q  86 gacttttgaaaaatgaatggatccatgtggagtttaagttggaggatcatgagattagtctttatgcacaaatgggaatccacgtgtgg 174  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| |||| |||||||||||||||||||||||||||||    
T  26146295 gacttttgaaaaaggaatggatccatgtggagtttaagttgaaggatcacgagaatagtgtttatgcacaaatgggaatccacgtgtgg 26146383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 27607889 - 27607829
Alignment:
Q  154 caaatgggaatccacgtgtggaatgagaaaagcaacacggaggaggagaatgtggtattca 214  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  27607889 caaatgggaatccacgtgtggaatgagaaaagcaacacagaggagaagaatgtggtattca 27607829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 27608046 - 27607948
Alignment:
Q  18 aactttgtttcatacctcgaaattgaatgaactcagtaaaacacaatgcaagtataatatggagaaaggacttttgaaaaatgaatggatccatgtggag 117  Q
    ||||||||||||||||||||||||||||  | ||||||||| |||||||            ||||||| |||||||||||||||||||||||||||||||    
T  27608046 aactttgtttcatacctcgaaattgaatagattcagtaaaagacaatgc------------gagaaagaacttttgaaaaatgaatggatccatgtggag 27607959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 25486668 - 25486709
Alignment:
Q  86 gacttttgaaaaatgaatggatccatgtggagtttaagttgg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  25486668 gacttttgaaaaatgaatggatccatgtggagtttaagttgg 25486709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 26059223 - 26059262
Alignment:
Q  86 gacttttgaaaaatgaatggatccatgtggagtttaagtt 125  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26059223 gacttttgaaaaatgaatggatccatgtggagtttaagtt 26059262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 26079193 - 26079232
Alignment:
Q  86 gacttttgaaaaatgaatggatccatgtggagtttaagtt 125  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26079193 gacttttgaaaaatgaatggatccatgtggagtttaagtt 26079232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 25514246 - 25514288
Alignment:
Q  154 caaatgggaatccacgtgtggaatgagaaaagcaacacggagg 196  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  25514246 caaatgggaatccacgtgtggaaggagaaaagcaacacggagg 25514288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 25583088 - 25583130
Alignment:
Q  154 caaatgggaatccacgtgtggaatgagaaaagcaacacggagg 196  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  25583088 caaatgggaatccacgtgtggaaggagaaaagcaacacggagg 25583130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 27657494 - 27657432
Alignment:
Q  152 cacaaatgggaatccacgtgtggaatgagaaaagcaacacggaggaggagaatgtggtattca 214  Q
    ||||||||||||||||||||| |||  |||||||||||| ||| |||||| ||||||||||||    
T  27657494 cacaaatgggaatccacgtgttgaagaagaaaagcaacatggatgaggaggatgtggtattca 27657432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 27657594 - 27657544
Alignment:
Q  76 atggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagttg 126  Q
    ||||| |||| ||||||||||||||||||||||||||||||| ||||||||    
T  27657594 atggacaaagaacttttgaaaaatgaatggatccatgtggagcttaagttg 27657544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 25514161 - 25514202
Alignment:
Q  86 gacttttgaaaaatgaatggatccatgtggagtttaagttgg 127  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  25514161 gacttttgaaaaatgaatggatacatgtggagtttaagttgg 25514202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 26805825 - 26805877
Alignment:
Q  76 atggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagttgga 128  Q
    ||||| |||| ||||| ||||||||||||||||||||||||| ||||||||||    
T  26805825 atggacaaagtactttcgaaaaatgaatggatccatgtggagcttaagttgga 26805877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 31287988 - 31288052
Alignment:
Q  150 tgcacaaatgggaatccacgtgtggaatgagaaaagcaacacggaggaggagaatgtggtattca 214  Q
    |||||||||||||||||||||||  || ||||||| |||| | ||||||||||||||| ||||||    
T  31287988 tgcacaaatgggaatccacgtgttaaaggagaaaaacaacgcagaggaggagaatgtgatattca 31288052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 25583014 - 25583049
Alignment:
Q  86 gacttttgaaaaatgaatggatccatgtggagttta 121  Q
    ||||||||||||||||||||||||||||||||||||    
T  25583014 gacttttgaaaaatgaatggatccatgtggagttta 25583049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 25486757 - 25486799
Alignment:
Q  154 caaatgggaatccacgtgtggaatgagaaaagcaacacggagg 196  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  25486757 caaatcggaatccacgtgtggaaggagaaaagcaacacggagg 25486799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 26059309 - 26059351
Alignment:
Q  154 caaatgggaatccacgtgtggaatgagaaaagcaacacggagg 196  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  26059309 caaatgggaatccacgtgtggaaggagaaaagcaacatggagg 26059351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 26079279 - 26079321
Alignment:
Q  154 caaatgggaatccacgtgtggaatgagaaaagcaacacggagg 196  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  26079279 caaatgggaatccacgtgtggaaggagaaaagcaacatggagg 26079321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 25548358 - 25548400
Alignment:
Q  154 caaatgggaatccacgtgtggaatgagaaaagcaacacggagg 196  Q
    |||||||||||||| |||||||| ||||||||||||| |||||    
T  25548358 caaatgggaatccatgtgtggaaggagaaaagcaacatggagg 25548400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 26626533 - 26626583
Alignment:
Q  150 tgcacaaatgggaatccacgtgtggaatgagaaaagcaacacggaggagga 200  Q
    |||||||||||||||||| |||| ||| |||||||||||||| || |||||    
T  26626533 tgcacaaatgggaatccatgtgttgaaggagaaaagcaacacagatgagga 26626583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 26638814 - 26638864
Alignment:
Q  150 tgcacaaatgggaatccacgtgtggaatgagaaaagcaacacggaggagga 200  Q
    ||||| ||||||||||||||| |  || |||||||||||||||||||||||    
T  26638814 tgcaccaatgggaatccacgttttaaaggagaaaagcaacacggaggagga 26638864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 26732510 - 26732560
Alignment:
Q  150 tgcacaaatgggaatccacgtgtggaatgagaaaagcaacacggaggagga 200  Q
    |||||||||||||||||| |||| ||| |||||||||||||| || |||||    
T  26732510 tgcacaaatgggaatccatgtgttgaaggagaaaagcaacacagatgagga 26732560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 26744780 - 26744830
Alignment:
Q  150 tgcacaaatgggaatccacgtgtggaatgagaaaagcaacacggaggagga 200  Q
    ||||| ||||||||||||||| |  || |||||||||||||||||||||||    
T  26744780 tgcaccaatgggaatccacgttttaaaggagaaaagcaacacggaggagga 26744830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 214
Target Start/End: Complemental strand, 27703643 - 27703614
Alignment:
Q  185 gcaacacggaggaggagaatgtggtattca 214  Q
    ||||||||||||||||||||||||||||||    
T  27703643 gcaacacggaggaggagaatgtggtattca 27703614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 28795798 - 28795842
Alignment:
Q  154 caaatgggaatccacgtgtggaatgagaaaagcaacacggaggag 198  Q
    |||||||||||||||||| |||| |||||||||||| | ||||||    
T  28795798 caaatgggaatccacgtgaggaaggagaaaagcaacgcagaggag 28795842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 36 - 215
Target Start/End: Original strand, 16524 - 16702
Alignment:
Q  36 gaaattgaatgaactcagtaaaacacaatgcaagtataatatggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagttggaggatcat 135  Q
    ||||||| |||||||  |||||| |||||   ||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| |||||||     
T  16524 gaaattgtatgaactaggtaaaagacaatatgagtataatatggacaaaggacttt-gaaaagtgaatggatccatgtggagtttaagttgaaggatcac 16622  T
Q  136 gagattagtctttatgcacaaatgggaatccacgtgtggaatgagaaaagcaacacggaggaggagaatgtggtattcaa 215  Q
    |||| |||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16623 gagaatagtgtttatacacaaatgggagtccacgtgtggaatgagaaaagcaacacggaggaggagaatgtggtattcaa 16702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 29270766 - 29270668
Alignment:
Q  18 aactttgtttcatacctcgaaattgaatgaactcagtaaaacacaatgcaagtataatatggagaaaggacttttgaaaaatgaatggatccatgtggag 117  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||            |||||||||||||||||||||||||||||||||||||||    
T  29270766 aactttgtttcatacctcaaaattgaatgaactcattaaaacacaatgc------------gagaaaggacttttgaaaaatgaatggatccatgtggag 29270679  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 29270609 - 29270549
Alignment:
Q  154 caaatgggaatccacgtgtggaatgagaaaagcaacacggaggaggagaatgtggtattca 214  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29270609 caaatgggaatccacgtgtggaatgagaaaagcaacacggatgaggagaatgtggtattca 29270549  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 265202 - 265145
Alignment:
Q  68 agtataatatggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagtt 125  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||    
T  265202 agtataatatggacaaaggacttttgaaaaatgaatggatccatttggaatttaagtt 265145  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 265087 - 265031
Alignment:
Q  150 tgcacaaatgggaatccacgtgtggaatgagaaaagcaacacggaggaggagaatgt 206  Q
    |||||||||||||||||||| ||  |  ||||||||||||| ||||||||| |||||    
T  265087 tgcacaaatgggaatccacgagttaatggagaaaagcaacagggaggaggataatgt 265031  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 26139328 - 26139376
Alignment:
Q  77 tggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagtt 125  Q
    ||||| ||| |||||| |||||||||||||||||||| ||| |||||||    
T  26139328 tggaggaagcacttttaaaaaatgaatggatccatgtagagcttaagtt 26139376  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 18686498 - 18686451
Alignment:
Q  76 atggagaaaggacttttgaaaaatgaatggatccatgtggagtttaag 123  Q
    ||||| |||| |||||| ||||||||||||||| ||||||||||||||    
T  18686498 atggacaaagcacttttaaaaaatgaatggatctatgtggagtttaag 18686451  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 18696304 - 18696257
Alignment:
Q  76 atggagaaaggacttttgaaaaatgaatggatccatgtggagtttaag 123  Q
    ||||| |||| |||||| ||||||||||||||| ||||||||||||||    
T  18696304 atggacaaagcacttttaaaaaatgaatggatcaatgtggagtttaag 18696257  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 18676458 - 18676409
Alignment:
Q  76 atggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagtt 125  Q
    ||||| |||| |||||| ||||||||||||||| |||||||||| |||||    
T  18676458 atggacaaagcacttttaaaaaatgaatggatctatgtggagttgaagtt 18676409  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 18686395 - 18686358
Alignment:
Q  155 aaatgggaatccacgtgtggaatgagaaaagcaacacg 192  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  18686395 aaatgggaatccacgtgtggaaggagaaaaacaacacg 18686358  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 18652386 - 18652350
Alignment:
Q  87 acttttgaaaaatgaatggatccatgtggagtttaag 123  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  18652386 acttttaaaaaatgaatggatctatgtggagtttaag 18652350  T

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Target: scaffold0277 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 1463 - 1415
Alignment:
Q  150 tgcacaaatgggaatccacgtgtggaatgagaaaagcaacacggaggag 198  Q
    |||||||||||||||||||||| |||  |||||||||||| | ||||||    
T  1463 tgcacaaatgggaatccacgtgaggatggagaaaagcaacgcagaggag 1415  T

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Target: scaffold0277; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 1564 - 1524
Alignment:
Q  76 atggagaaaggacttttgaaaaatgaatggatccatgtgga 116  Q
    ||||| |||| |||||| |||||||||||||||||||||||    
T  1564 atggaaaaagcacttttaaaaaatgaatggatccatgtgga 1524  T

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