View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5753_high_2 (Length: 432)
Name: NF5753_high_2
Description: NF5753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5753_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 24560180 - 24560594
Alignment:
| Q |
1 |
tcttgccatccaactatcctccctaacagacattctaactctacctcttcaaacctatctcccctttgcatattctgtttctctttcccttcacaaacca |
100 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24560180 |
tcttgccatccaactatcctccctaacaaacattccaactctacctcttcaaacctatctcccctttgcatattctgtttctctttcccttcacaaacca |
24560279 |
T |
|
| Q |
101 |
aacacaaaaactaaaataacaccnnnnnnnnnn-ccaaattagaaaattagaattctcctatagttcttgaaaatgtccattaaaagcaaaagggtatgc |
199 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24560280 |
aacacaaaaactaaaataacacttttttttttttccaaattagaaaattagaattctcctatagttcttgaaaatgtccattaaaagcaaaagggtatgc |
24560379 |
T |
|
| Q |
200 |
tttagtcctaatgtcaatgacacaccaacattttttctcatgaagagggaaattggaagtggtaatttcaaattaaccaaagaacaaacaagattgtcat |
299 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24560380 |
tttagtcctaatgtcaatgacataccaacattttttctcaagaagagagaaattggaagtggtaatttcaaattaaccaaagaacaaacaagattgtcat |
24560479 |
T |
|
| Q |
300 |
cacctttgaaattcctagtgcagctaggaacaaaagtggcaagttccataagaagtgtttctatgaaaagaagatcctctaggaaggtttcttcttcatc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24560480 |
cacctttgaaattcctagtgcagctaggaacaaaagtggcaagttccataagaagtgtttctatgaaaagaagatcctctaggaaggtttcttcttcatc |
24560579 |
T |
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| Q |
400 |
tactttggtaaggtc |
414 |
Q |
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||||||||||||||| |
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| T |
24560580 |
tactttggtaaggtc |
24560594 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 393
Target Start/End: Complemental strand, 3630390 - 3630335
Alignment:
| Q |
338 |
gcaagttccataagaagtgtttctatgaaaagaagatcctctaggaaggtttcttc |
393 |
Q |
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|||||||| |||||| ||||||| ||| ||||||||||||||||||||||||||| |
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| T |
3630390 |
gcaagttctataagagctgtttctttgagaagaagatcctctaggaaggtttcttc |
3630335 |
T |
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